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Gpc5 Gene Detail
 Symbol
Name
ID
Gpc5
glypican 5
MGI:1194894

Nomenclature History
Synonyms A230034F01Rik
Genetic Map
Chromosome 14
cytoband E4
 
Mapping data( 3)
Sequence Map
Chr14:115491848-116923659 bp, + strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: glypican
TreeFam: TF105317
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000022112 Ensembl Gene Model | MGI Sequence Detail 1431812 C57BL/6J ± Kb
transcript NM_175500 RefSeq | MGI Sequence Detail 2885 C57BL/6
polypeptide Q8CAL5 UniProt | EBI | MGI Sequence Detail 572 Not Applicable
For the selected sequences
All sequences(20)
Alleles
and
phenotypes 		All alleles(1) : Gene trapped(1)
Polymorphisms SNPs within 2kb(3002 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Component anchored to membrane, extracellular region...
Function heparan sulfate proteoglycan binding
External Resources: FuncBase
Expression Literature Summary: (4 records)
Data Summary: Assays (2)    Results (2)    Tissues (2)    Images (1)
Theiler Stages: 16,28
  Assay Type Assays   Results
      RT-PCR 2   2
cDNA source data(7)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(8) cDNA(7) Primer pair(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000022112
DoTS DT.55277509, DT.91421573, DT.97386773
Consensus CDS Project CCDS27329.1
UniGene 320791
DFCI TC1585512, TC1595443
NIA Mouse Gene Index U015956
Entrez Gene 103978
International Mouse Knockout Project Status Gpc5
Protein
domains
InterPro ID Description
IPR001863 Glypican
IPR015501 Glypican-3
IPR019803 Glypican, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:45283 Saunders S et al., "Expression of the cell surface proteoglycan glypican-5 is developmentally regulated in kidney, limb, and brain." Dev Biol 1997 Oct 1;190(1):78-93
(Latest) J:116479 Luxardi G et al., "Glypicans are differentially expressed during patterning and neurogenesis of early mouse brain." Biochem Biophys Res Commun 2007 Jan 5;352(1):55-60
All references(6)
Other
accession IDs 		MGI:2442523
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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