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Gpc1 Gene Detail
 Symbol
Name
ID
Gpc1
glypican 1
MGI:1194891

Nomenclature History
Genetic Map
Chromosome 1
Syntenic
 
Mapping data( 2)
Sequence Map
Chr1:94728263-94756773 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: glypican
TreeFam: TF105317
Sequences
Representative Sequences Length Strain/Species Flank
genomic 14733 NCBI Gene Model | MGI Sequence Detail 28511 C57BL/6J ± Kb
transcript NM_016696 RefSeq | MGI Sequence Detail 3552 C57BL/6
polypeptide Q9QZF2 UniProt | EBI | MGI Sequence Detail 557 Not Applicable
For the selected sequences
All sequences(26)
Alleles
and
phenotypes 		All alleles(3) : Targeted, knock-out(1) Gene trapped(2)
Polymorphisms SNPs within 2kb(164 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Component anchored to membrane, extracellular region...
Function heparan sulfate proteoglycan binding
External Resources: FuncBase
Expression Literature Summary: (7 records)
Data Summary: Assays (3)    Results (4)    Tissues (3)    Images (1)
Theiler Stages: 16,22,23
  Assay Type Assays   Results
      RT-PCR 2   3
      RNA in situ 1   1
cDNA source data(156)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(159) cDNA(156) Primer pair(3)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000034220
DoTS DT.534833
Consensus CDS Project CCDS15177.1
UniGene 297976
DFCI TC1574597
NIA Mouse Gene Index U000620
Entrez Gene 14733
International Mouse Knockout Project Status Gpc1
Protein
domains
InterPro ID Description
IPR001863 Glypican
IPR015502 Glypican-1
IPR019803 Glypican, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:5369 Acton RT et al., "Variations among sublines of inbred AKR mice." Nat New Biol 1973 Sep 5;245(140):8-10
(Latest) J:153618 Ahrens MJ et al., "Convergent extension movements in growth plate chondrocytes require gpi-anchored cell surface proteins." Development 2009 Oct;136(20):3463-74
All references(15)
Other
accession IDs 		MGI:2138263
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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