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Col9a3 Gene Detail
 Symbol
Name
ID
Col9a3
collagen, type IX, alpha 3
MGI:894686


Nomenclature History
Genetic Map
Chromosome 2
108.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr2:180332495-180356890 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee    (Mammalian Orthology)
Comparative Map (Mouse/Human Col9a3 ± 2 cM)
Protein SuperFamily: human herpesvirus 4 BHLF1 protein
TreeFam: TF332900
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000016344 VEGA Gene Model | MGI Sequence Detail 24396 C57BL/6J ± Kb
transcript NM_009936 RefSeq | MGI Sequence Detail 2846 C57BL/6
polypeptide NP_034066 RefSeq | MGI Sequence Detail 680 C57BL/6
For the selected sequences
All sequences(25)
Alleles
and
phenotypes
All alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(96 from dbSNP Build 128)  
Expression Literature Summary: (14 records)
Data Summary: Assays (4)    Results (54)    Tissues (19)    Images (2)
Theiler Stages: 18,19,20,21,22
  Assay Type Assays   Results
      RT-PCR 1   44
      RNA in situ 3   10
cDNA source data(7)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(11) cDNA(9) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000027570
DFCI TC1576771
NIA Mouse Gene Index U056872
Entrez Gene 12841
VEGA Gene Model OTTMUSG00000016344
International Mouse Knockout Project Status Col9a3
Protein
domains
InterPro ID Description
IPR008160 Collagen triple helix repeat
References
(Earliest) J:17466 Abe N et al., "The complete primary structure of the long form of mouse alpha 1(IX) collagen chain and its expression during limb development." Biochim Biophys Acta 1994 Jan 11;1204(1):61-7
(Latest) J:145493 Chakraborty S et al., "Shared gene expression profiles in developing heart valves and osteoblast progenitor cells." Physiol Genomics 2008 Sep 17;35(1):75-85
All references(21)
Other
accession IDs
MGI:2139235

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory