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Smo Gene Detail
 Symbol
Name
ID
Smo
smoothened homolog (Drosophila)
MGI:108075


Nomenclature History
Synonyms E130215L21Rik
Genetic Map
Chromosome 6
7.2 cM, cytoband A3.3
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr6:29685694-29711365 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Smo ± 2 cM)
Protein SuperFamily: G protein-coupled receptor smoothened homolog
TreeFam: TF106460
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000013446 VEGA Gene Model | MGI Sequence Detail 25672 C57BL/6J ± Kb
transcript NM_176996 RefSeq | MGI Sequence Detail 3977 C57BL/6
polypeptide NP_795970 RefSeq | MGI Sequence Detail 793 C57BL/6
For the selected sequences
All sequences(35)
Alleles
and
phenotypes
All alleles(5) : Targeted, knock-out(2) Targeted, other(2) Chemically induced(1)
Both an ENU-induced mutation and a null mutation are midgestation lethal. Observed defects include failure of neural tube closure and heart and gut defects. Conditional knockouts in chondrocytes and dental epithelium result in short long bones and dentalepithelium derivative defects, respectively.
Polymorphisms SNPs within 2kb(34 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (44 annotations)
Process cell development, cell fate specification...
Component cilium, integral to membrane...
Function G-protein coupled receptor activity, receptor activity...
External Resources: FuncBase
Expression Literature Summary: (35 records)
Data Summary: Assays (6)    Results (24)    Tissues (15)    Images (10)
Theiler Stages: 10,18,19,20,21,22,23,25
  Assay Type Assays   Results
      RT-PCR 1   2
      RNA in situ 4   18
      Northern blot 1   4
cDNA source data(111)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents
All nucleic(119) Genomic(1) cDNA(114) Primer pair(2) Other(2)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000001761
DoTS DT.101394450, DT.101736449, DT.55267335, DT.87072474, DT.94249037
Consensus CDS Project CCDS19965.1
UniGene 29279
DFCI TC1576926, TC1587732
Entrez Gene 319757
VEGA Gene Model OTTMUSG00000013446
International Mouse Knockout Project Status Smo
Protein
domains
InterPro ID Description
IPR000024 Frizzled cysteine-rich domain
IPR000539 Frizzled protein
IPR015526 Frizzled related
IPR017981 GPCR, family 2-like
IPR020067 Frizzled-like domain
IPR020068 Frizzled domain, subgroup
References
(Earliest) J:36573 Stone DM et al., "The tumour-suppressor gene patched encodes a candidate receptor for Sonic hedgehog [see comments]" Nature 1996 Nov 14;384(6605):129-34
(Latest) J:155826 King P et al., "Shh signaling regulates adrenocortical development and identifies progenitors of steroidogenic lineages." Proc Natl Acad Sci U S A 2009 Dec 15;106(50):21185-90
All references(115)
Other
accession IDs
MGD-MRK-37112, MGI:1276113, MGI:2442674

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/06/2010
MGI_4.32
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