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Upk1b Gene Detail
 Symbol
Name
ID
Upk1b
uroplakin 1B
MGI:98912

Nomenclature History
Synonyms Tspan20, Upk1
Genetic Map
Chromosome 16
cytoband B5-C2
 
Mapping data( 2)
Sequence Map
Chr16:38773303-38800314 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: uroplakin
TreeFam: TF335659
Sequences
Representative Sequences Length Strain/Species Flank
genomic 22268 NCBI Gene Model | MGI Sequence Detail 27012 C57BL/6J ± Kb
transcript NM_178924 RefSeq | MGI Sequence Detail 1769 C57BL/6
polypeptide Q9Z2C6 UniProt | EBI | MGI Sequence Detail 260 Not Applicable
For the selected sequences
All sequences(17)
Polymorphisms SNPs within 2kb(115 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component integral to membrane, membrane...
External Resources: FuncBase
Expression Literature Summary: (4 records)
Data Summary: Assays (6)    Results (14)    Tissues (8)    Images (2)
Theiler Stages: 22,23,24,25,26
  Assay Type Assays   Results
      RT-PCR 5   12
      Immunohistochemistry 1   2
cDNA source data(11)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(16) Genomic(1) cDNA(12) Primer pair(3) Antibodies(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000049436
DoTS DT.97336888
Consensus CDS Project CCDS28174.1
UniGene 479248
DFCI TC1583079
NIA Mouse Gene Index U037041
Entrez Gene 22268
International Mouse Knockout Project Status Upk1b
Protein
domains
InterPro ID Description
IPR008952 Tetraspanin, EC2 domain
IPR018499 Tetraspanin
Graphical View of Protein Domain Structure
References
(Earliest) J:15639 Ryan AM et al., "Chromosomal localization of uroplakin genes of cattle and mice." Mamm Genome 1993 Nov;4(11):656-61
(Latest) J:150849 Yu Z et al., "The epidermal differentiation-associated Grainyhead gene Get1/Grhl3 also regulates urothelial differentiation." EMBO J 2009 Jul 8;28(13):1890-903
All references(7)
Other
accession IDs 		MGD-MRK-15365, MGD-MRK-15367, MGI:2146422
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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