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Ift88 Gene Detail
 Symbol
Name
ID
Ift88
intraflagellar transport 88 homolog (Chlamydomonas)
MGI:98715


Nomenclature History
Synonyms fxo, IFT88, Oak Ridge polycystic kidneys, orpk, polaris, Tg737, Tg737Rpw, TgN737Rpw, Ttc10
Genetic Map
Chromosome 14
21.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr14:58042899-58136773 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ift88 ± 2 cM)
TreeFam: TF313218
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000026733 VEGA Gene Model | MGI Sequence Detail 93875 C57BL/6J ± Kb
transcript NM_009376 RefSeq | MGI Sequence Detail 3024 -
polypeptide Q61371 UniProt | EBI | MGI Sequence Detail 824 Not Applicable
For the selected sequences
All sequences(21)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(1) Transgenic(1) Chemically induced(2)
Mice homozygous for a null allele display early to mid-gestation lethality, random patterning of the left-right body axis, neural tube defects, pericardial sac expansion, enlarged limb buds, polydactyly, and absent embryonic node cilia.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms SNPs within 2kb(267 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (33 annotations)
Process anterior/posterior pattern formation, brain development...
Component axoneme, cilium...
Function binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (25 records)
Data Summary: Assays (1)    Results (4)    Tissues (2)
Theiler Stages: 28
  Assay Type Assays   Results
      Northern blot 1   4
cDNA source data(33)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(39) Genomic(6) cDNA(33)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000040040
DoTS DT.101715261, DT.40185677
Consensus CDS Project CCDS36937.1
UniGene 4653
DFCI TC1579959
NIA Mouse Gene Index U015690
Entrez Gene 21821
VEGA Gene Model OTTMUSG00000026733
International Mouse Knockout Project Status Ift88
Protein
domains
InterPro ID Description
IPR001440 Tetratricopeptide TPR-1
IPR011990 Tetratricopeptide-like helical
IPR013026 Tetratricopeptide repeat-containing
IPR019734 Tetratricopeptide repeat
Graphical View of Protein Domain Structure
References
(Earliest) J:18508 Moyer JH et al., "Candidate gene associated with a mutation causing recessive polycystic kidney disease in mice." Science 1994 May 27;264(5163):1329-33
(Latest) J:154656 Follit JA et al., "Characterization of mouse IFT complex B." Cell Motil Cytoskeleton 2009 Aug;66(8):457-68
All references(65)
Other
accession IDs
MGD-MRK-15052, MGI:2145834

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory