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Nkx3-1 Gene Detail
 Symbol
Name
ID
Nkx3-1
NK-3 transcription factor, locus 1 (Drosophila)
MGI:97352


Nomenclature History
Synonyms bagpipe, Bax, Nkx-3.1, NKX3.1, NKX3A
Genetic Map
Chromosome 14
30.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr14:69808749-69812715 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Nkx3-1 ± 2 cM)
TreeFam: TF315720
Sequences
Representative Sequences Length Strain/Species Flank
genomic 18095 NCBI Gene Model | MGI Sequence Detail 3967 C57BL/6J ± Kb
transcript NM_010921 RefSeq | MGI Sequence Detail 3137 C57BL/6
polypeptide P97436 UniProt | EBI | MGI Sequence Detail 237 Not Applicable
For the selected sequences
All sequences(15)
Alleles
and
phenotypes
All alleles(9) : Targeted, knock-out(3) Targeted, other(6)
Homozygotes for targeted null mutations exhibit reduced minor salivary glands with altered duct morphology, altered prostate ductal morphogenesis, and prostate epithelial hyperplasia and neoplasia. Heterozygotes develop neoplastic foci.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (2)  
Polymorphisms RFLP(1) SNPs within 2kb(37 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (24 annotations)
Process branching involved in prostate gland morphogenesis, branching morphogenesis of a tube...
Component nucleus
Function DNA binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (18 records)
Data Summary: Assays (5)    Results (54)    Tissues (50)    Images (5)
Theiler Stages: 2,3,4,5,16,17,21,26,28
  Assay Type Assays   Results
      RT-PCR 1   15
      RNA in situ 4   39
cDNA source data(9)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(14) Genomic(2) cDNA(9) Primer pair(1) Other(2)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000022061
DoTS DT.87047008
Consensus CDS Project CCDS27237.1
UniGene 3520
DFCI TC1588491
NIA Mouse Gene Index U015805
Entrez Gene 18095
International Mouse Knockout Project Status Nkx3-1
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR009057 Homeodomain-like
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
IPR020479 Homeobox, region
Graphical View of Protein Domain Structure
References
(Earliest) J:37120 Bieberich CJ et al., "Prostate-specific and androgen-dependent expression of a novel homeobox gene." J Biol Chem 1996 Dec 13;271(50):31779-82
(Latest) J:153914 Song H et al., "Loss of Nkx3.1 leads to the activation of discrete downstream target genes during prostate tumorigenesis." Oncogene 2009 Sep 17;28(37):3307-19
All references(51)
Other
accession IDs
MGD-MRK-12894

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory