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Sox6 Gene Detail
 Symbol
Name
ID
Sox6
SRY-box containing gene 6
MGI:98368


Nomenclature History
Genetic Map
Chromosome 7
55.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr7:122614858-123174561 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Sox6 ± 2 cM)
Protein SuperFamily: transcription factor Sox5/Sox6/Sox13
TreeFam: TF320471
Sequences
Representative Sequences Length Strain/Species Flank
genomic 20679 NCBI Gene Model | MGI Sequence Detail 559704 C57BL/6J ± Kb
transcript NM_011445 RefSeq | MGI Sequence Detail 8227 -
polypeptide P40645 UniProt | EBI | MGI Sequence Detail 827 Not Applicable
For the selected sequences
All sequences(34)
Alleles
and
phenotypes
All alleles(5) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(2)
Homozygotes for null mutations exhibit cardioskeletal myopathy, cardiac blockage, delayed growth, and early postnatal lethality.
Polymorphisms PCR(1) SNPs within 2kb(2903 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (33 annotations)
Process cardiac cell differentiation, cartilage development...
Component nucleus, transcription factor complex...
Function DNA binding, promoter binding...
External Resources: FuncBase
Expression Literature Summary: (28 records)
Data Summary: Assays (15)    Results (161)    Tissues (96)    Images (14)
Theiler Stages: 2,3,4,5,10,16,17,18,20,21,23,25,28
  Assay Type Assays   Results
      Western blot 1   4
      RT-PCR 3   63
      In situ reporter (knock in) 1   6
      RNA in situ 5   67
      Northern blot 5   21
cDNA source data(51)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(57) cDNA(53) Primer pair(4) Antibodies(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000051910
DoTS DT.101735451, DT.40158115, DT.94141790, DT.97360110
Consensus CDS Project CCDS40097.1, CCDS40098.1
UniGene 323365
DFCI TC1581580, TC1596307, TC1600084
NIA Mouse Gene Index U029157
Entrez Gene 20679
International Mouse Knockout Project Status Sox6
Protein
domains
InterPro ID Description
IPR000910 High mobility group, HMG1/HMG2
IPR009071 High mobility group, superfamily
Graphical View of Protein Domain Structure
References
(Earliest) J:1195 Denny P et al., "A conserved family of genes related to the testis determining gene, SRY." Nucleic Acids Res 1992 Jun 11;20(11):2887
(Latest) J:155756 van Rooij E et al., "A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance." Dev Cell 2009 Nov;17(5):662-73
All references(51)
Other
accession IDs
MGD-MRK-14507, MGI:2142080

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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