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Pdgfb Gene Detail
 Symbol
Name
ID
Pdgfb
platelet derived growth factor, B polypeptide
MGI:97528


Nomenclature History
Synonyms PDGF-B, Sis
Genetic Map
Chromosome 15
46.8 cM, cytoband E
Detailed Genetic Map ± 1 cM
 
Mapping data( 56)

Sequence Map
Chr15:79826330-79845238 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cat, domestic; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Pdgfb ± 2 cM)
Protein SuperFamily: platelet-derived growth factor
TreeFam: TF319554
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000000489 Ensembl Gene Model | MGI Sequence Detail 18909 C57BL/6J ± Kb
transcript NM_011057 RefSeq | MGI Sequence Detail 2956 -
polypeptide P31240 UniProt | EBI | MGI Sequence Detail 241 Not Applicable
For the selected sequences
All sequences(32)
Alleles
and
phenotypes
All alleles(5) : Targeted, knock-out(3) Targeted, other(1) Gene trapped(1)
Homozygotes for targeted null mutations exhibit absence of microvascular pericytes, capillary aneurisms, endothelial hyperplasia, edema, hemorrhages, erythroblastosis, macrocytic anemia, thrombocytopenia, kidney defects, and perinatal lethality.
Phenotype Images (1)  
Polymorphisms All PCR and RFLP(10) : PCR(3) RFLP(7) SNPs within 2kb(128 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process actin cytoskeleton organization, branching involved in salivary gland morphogenesis...
Component extracellular region, membrane...
Function collagen binding, growth factor activity...
External Resources: FuncBase
Expression Literature Summary: (44 records)
Data Summary: Assays (4)    Results (21)    Tissues (13)    Images (3)
Theiler Stages: 9,11,13,14,22,23,28
  Assay Type Assays   Results
      RT-PCR 1   4
      RNA in situ 1   1
      RNase protection 2   16
cDNA source data(24)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(43) Genomic(12) cDNA(24) Primer pair(4) Other(3)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000000489
DoTS DT.101707310, DT.528267
Consensus CDS Project CCDS27656.1
UniGene 144089
PDB 2DZ4, 2DZ5
DFCI TC1583040, TC1589294, TC1704034
NIA Mouse Gene Index U036419
Entrez Gene 18591
International Mouse Knockout Project Status Pdgfb
Protein
domains
InterPro ID Description
IPR000072 Platelet-derived growth factor (PDGF)
IPR006782 Platelet-derived growth factor, N-terminal
IPR015583 Platelet-Derived Growth Factor B Chain
Graphical View of Protein Domain Structure
References
(Earliest) J:6890 Dalla-Favera R et al., "Chromosomal localization of the human homolog (c-sis) of the simian sarcoma virus onc gene." Science 1982 Nov 12;218(4573):686-8
(Latest) J:152840 Hou SC et al., "Ankrd17, an ubiquitously expressed ankyrin factor, is essential for the vascular integrity during embryogenesis." FEBS Lett 2009 Sep 3;583(17):2765-71
All references(145)
Other
accession IDs
MGD-MRK-13212, MGD-MRK-14423

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory