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Ly9 Gene Detail
 Symbol
Name
ID
Ly9
lymphocyte antigen 9
MGI:96885

Nomenclature History
Synonyms CD229, Lgp100, SLAMF3, T100
Genetic Map
Chromosome 1
93.3 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 45)

Sequence Map
Chr1:173518755-173537541 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ly9 ± 2 cM)
TreeFam: TF334964
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000016916 VEGA Gene Model | MGI Sequence Detail 18787 C57BL/6J ± Kb
transcript NM_008534 RefSeq | MGI Sequence Detail 2449 C57BL/6
polypeptide Q01965 UniProt | EBI | MGI Sequence Detail 654 Not Applicable
For the selected sequences
All sequences(48)
Alleles
and
phenotypes 		All alleles(2) : Targeted, knock-out(1) Gene trapped(1)
This locus controls an antigen on thymocytes, lymphocytes and bone marrow cells. The a allele determines Ly9.1 antigen in A/J, 129/Re, BALB/c and C3H/He; the b allele determines antigen Ly9.2 in the C57 family of strains, HTI/Go, MA/My, F/St and C58/Lw. Null mutants are viable, healthy and fertile.
Polymorphisms RFLP(1) SNPs within 2kb(142 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process cell adhesion
Component integral to membrane, membrane...
Function protein binding
External Resources: FuncBase
Expression cDNA source data(53)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(68) Genomic(13) cDNA(54) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000004707
DoTS DT.101737449, DT.110929981, DT.487450, DT.91361457, DT.91386897
Consensus CDS Project CCDS35779.1
UniGene 560
DFCI TC1580063, TC1609336, TC1617741
NIA Mouse Gene Index U022058
Entrez Gene 17085
VEGA Gene Model OTTMUSG00000016916
International Mouse Knockout Project Status Ly9
Protein
domains
InterPro ID Description
IPR003599 Immunoglobulin subtype
IPR007110 Immunoglobulin-like
IPR013106 Immunoglobulin V-set
IPR015631 Signalling lymphocyte activation molecule
Graphical View of Protein Domain Structure
References
(Earliest) J:6136 Durda PJ et al., "T100: a new murine cell surface glycoprotein detected by anti-Lyt-2.1 serum." J Immunol 1979 Apr;122(4):1407-12
(Latest) J:118645 Heidari Y et al., "Identification of chromosome intervals from 129 and C57BL/6 mouse strains linked to the development of systemic lupus erythematosus." Genes Immun 2006 Oct;7(7):592-9
All references(40)
Other
accession IDs 		MGD-MRK-12008, MGD-MRK-12051, MGI:2138373
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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