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Gata1 Gene Detail
 Symbol
Name
ID
Gata1
GATA binding protein 1
MGI:95661


Nomenclature History
STS DXCch5
Synonyms Gata-1, Gf-1
Genetic Map
Chromosome X
1.9 cM, cytoband A2
Detailed Genetic Map ± 1 cM
 
Mapping data( 19)

Sequence Map
ChrX:7536386-7555197 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; platypus; rat; wallaby, tammar    (Mammalian Orthology)
Comparative Map (Mouse/Human Gata1 ± 2 cM)
Protein SuperFamily: transcription factor, GATA-1/2/3 types
TreeFam: TF315391
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000018011 VEGA Gene Model | MGI Sequence Detail 18812 C57BL/6J ± Kb
transcript NM_008089 RefSeq | MGI Sequence Detail 1807 -
polypeptide P17679 UniProt | EBI | MGI Sequence Detail 413 Not Applicable
For the selected sequences
All sequences(18)
Alleles
and
phenotypes
All alleles(15) : Targeted, knock-out(4) Targeted, other(9) Gene trapped(1) Chemically induced(1)
Mutation of this locus affects hematopoiesis. Most hemizygous mutant males mice die at mid-gestation and exhibit blocked erythroid development. Female null and hypomorphic mutants survive birth but exhibit varying degrees of anemia and impaired hematopoiesis.
Phenotype Images (4)  
Polymorphisms RFLP(9) SNPs within 2kb(73 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process regulation of transcription, regulation of transcription, DNA-dependent...
Component nucleus
Function DNA binding, metal ion binding...
External Resources: FuncBase
Expression Literature Summary: (67 records)
Data Summary: Assays (27)    Results (300)    Tissues (210)    Images (30)
Theiler Stages: 2,3,4,5,9,10,11,12,13,14,15,16,17,18,19,20,21,22,28
  Assay Type Assays   Results
      Western blot 1   3
      RT-PCR 18   137
      RNA in situ 6   141
      Northern blot 2   19
cDNA source data(27)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(53) Genomic(6) cDNA(29) Primer pair(15) Other(3) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000031162
DoTS DT.531152
Consensus CDS Project CCDS29981.1
UniGene 335973
PDB 1GNF, 1Y0J
DFCI TC1583912
NIA Mouse Gene Index U039236
Entrez Gene 14460
VEGA Gene Model OTTMUSG00000018011
International Mouse Knockout Project Status Gata1
Protein
domains
InterPro ID Description
IPR000679 Zinc finger, GATA-type
IPR013088 Zinc finger, NHR/GATA-type
IPR016374 Transcription factor, GATA-1/2/3
Graphical View of Protein Domain Structure
References
(Earliest) J:9808 Tsai SF et al., "Cloning of cDNA for the major DNA-binding protein of the erythroid lineage through expression in mammalian cells." Nature 1989 Jun 8;339(6224):446-51
(Latest) J:155476 Gandillet A et al., "Sox7-sustained expression alters the balance between proliferation and differentiation of hematopoietic progenitors at the onset of blood specification." Blood 2009 Nov 26;114(23):4813-22
All references(198)
Other
accession IDs
MGD-MRK-10002, MGD-MRK-10054, MGD-MRK-9998

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory