About   Help   FAQ
Tour our new Quick Search
Cnga1 Gene Detail
 Symbol
Name
ID
Cnga1
cyclic nucleotide gated channel alpha 1
MGI:88436

Nomenclature History
Synonyms Cncg
Genetic Map
Chromosome 5
41.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr5:72994935-73033991 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cnga1 ± 2 cM)
Protein SuperFamily: cyclic nucleotide-gated channel, alpha subunit
TreeFam: TF319048
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000026745 VEGA Gene Model | MGI Sequence Detail 39057 C57BL/6J ± Kb
transcript NM_007723 RefSeq | MGI Sequence Detail 2750 C57BL/6
polypeptide P29974 UniProt | EBI | MGI Sequence Detail 684 Not Applicable
For the selected sequences
All sequences(25)
Alleles
and
phenotypes 		All alleles(2) : Targeted, other(2)
Polymorphisms RFLP(1) SNPs within 2kb(238 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process ion transport, response to stimulus...
Component integral to membrane, membrane...
Function cGMP binding, ion channel activity...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (1)    Results (2)    Tissues (2)    Images (2)
Theiler Stages: 28
  Assay Type Assays   Results
      RNA in situ 1   2
cDNA source data(12)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(12) cDNA(12)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000067220
DoTS DT.40156464, DT.94126166, DT.94126170
Consensus CDS Project CCDS19333.1
DFCI TC1586133, TC1593627, TC1613782
Entrez Gene 12788
VEGA Gene Model OTTMUSG00000026745
International Mouse Knockout Project Status Cnga1
Protein
domains
InterPro ID Description
IPR000595 Cyclic nucleotide-binding
IPR005821 Ion transport
IPR014710 RmlC-like jelly roll fold
IPR018488 Cyclic nucleotide-binding, conserved site
IPR018490 Cyclic nucleotide-binding-like
Graphical View of Protein Domain Structure
References
(Earliest) J:2297 Altherr MR et al., "Chromosome mapping of the rod photoreceptor cGMP phosphodiesterase beta-subunit gene in mouse and human: tight linkage to the Huntington disease region (4p16.3)." Genomics 1992 Apr;12(4):750-4
(Latest) J:153683 Jia L et al., "Retinoid-related orphan nuclear receptor RORbeta is an early-acting factor in rod photoreceptor development." Proc Natl Acad Sci U S A 2009 Oct 13;106(41):17534-9
All references(13)
Other
accession IDs 		MGD-MRK-2038
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory