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App Gene Detail
 Symbol
Name
ID
App
amyloid beta (A4) precursor protein
MGI:88059


Nomenclature History
Synonyms Abeta, Adap, appican, betaAPP, Cvap, E030013M08Rik, protease nexin II
Genetic Map
Chromosome 16
56.0 cM, cytoband C3-qter
Detailed Genetic Map ± 1 cM
 
Mapping data( 48)

Sequence Map
Chr16:84954688-85173948 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; goat; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human App ± 2 cM)
Protein SuperFamily: Alzheimer's disease amyloid beta protein
TreeFam: TF317274
Sequences
Representative Sequences Length Strain/Species Flank
genomic 11820 NCBI Gene Model | MGI Sequence Detail 219261 C57BL/6J ± Kb
transcript NM_007471 RefSeq | MGI Sequence Detail 3140 C57BL/6
polypeptide P12023 UniProt | EBI | MGI Sequence Detail 770 Not Applicable
For the selected sequences
All sequences(90)
Alleles
and
phenotypes
All alleles(14) : Targeted, knock-out(5) Targeted, other(9)
Mice homozygous for disruptions in this gene exhibit reduced body weight, brain weight, size of forebrain commissures, locomotor activity, forelimb grip strength, and spatial learning scores. Many mice also exhibit agenesis of the corpus callosum, and extensive reactive gliosis.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (4)  
Polymorphisms All PCR and RFLP(13) : PCR(1) RFLP(12) SNPs within 2kb(1328 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (64 annotations)
Process adult locomotory behavior, apoptosis...
Component apical part of cell, axon...
Function binding, copper ion binding...
External Resources: FuncBase
Expression Literature Summary: (23 records)
Data Summary: Assays (4)    Results (83)    Tissues (82)    Images (4)
Theiler Stages: 11,13,15,17,20,22,26,28
  Assay Type Assays   Results
      RT-PCR 1   16
      RNA in situ 3   67
cDNA source data(23)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(37) Genomic(4) cDNA(30) Primer pair(2) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000022892
DoTS DT.101190035, DT.101226146, DT.101287752, DT.102548873, DT.103577624, DT.110737942, DT.91330139, DT.94144862, DT.94144936, DT.94312819, DT.94344131, DT.97368194, DT.97390493, DT.97390518, DT.97390521, DT.99867790
Consensus CDS Project CCDS28285.1
PDB 2ROZ, 2YSZ, 2YT0, 2YT1
DFCI TC1573751, TC1598258, TC1601541, TC1603938
NIA Mouse Gene Index U037237, U188913, U376466
Entrez Gene 11820
International Mouse Knockout Project Status App
Protein
domains
InterPro ID Description
IPR002223 Proteinase inhibitor I2, Kunitz metazoa
IPR008154 Amyloidogenic glycoprotein, extracellular
IPR008155 Amyloidogenic glycoprotein
IPR011178 Amyloidogenic glycoprotein, copper-binding
IPR013803 Amyloidogenic glycoprotein, amyloid-beta peptide
IPR015849 Amyloidogenic glycoprotein, heparin-binding
IPR019543 Beta-amyloid precursor protein C-terminal
IPR019744 Amyloidogenic glycoprotein, extracellular domain conserved site
IPR019745 Amyloidogenic glycoprotein, intracellular domain, conserved site
IPR020901 Proteinase inhibitor I2, Kunitz, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:31044 McAdam KP et al., "Secondary amyloidosis and the serum amyloid precursor in leprosy: geographical variation and association with leukocytosis." Int J Lepr Other Mycobact Dis 1977 Apr-Jun;45(2):150-7
(Latest) J:155652 Xu F et al., "AbetaPP/APLP2 family of Kunitz serine proteinase inhibitors regulate cerebral thrombosis." J Neurosci 2009 Apr 29;29(17):5666-70
All references(289)
Other
accession IDs
MGD-MRK-1105, MGD-MRK-1378, MGD-MRK-2255, MGI:2146529, MGI:2442007

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/06/2010
MGI_4.32
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