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Fgd5 Gene Detail
 Symbol
Name
ID
Fgd5
FYVE, RhoGEF and PH domain containing 5
MGI:2443369

Nomenclature History
Synonyms C330025N11Rik, ZFYVE23
Genetic Map
Chromosome 6
Syntenic
 
Mapping data( 1)
Sequence Map
Chr6:91928872-92025998 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: FYVE, RhoGEF and PH domain containing protein 5
TreeFam: TF343077
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000023856 VEGA Gene Model | MGI Sequence Detail 97127 C57BL/6J ± Kb
transcript NM_172731 RefSeq | MGI Sequence Detail 5636 C57BL/6
polypeptide Q80UZ0 UniProt | EBI | MGI Sequence Detail 1219 Not Applicable
For the selected sequences
All sequences(30)
Polymorphisms SNPs within 2kb(772 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process regulation of Rho protein signal transduction
Component cytoplasm, cytoskeleton...
Function guanyl-nucleotide exchange factor activity, metal ion binding...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (3)    Results (17)    Tissues (17)    Images (2)
Theiler Stages: 15,17,21
  Assay Type Assays   Results
      RNA in situ 3   17
cDNA source data(29)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(30) cDNA(29) Primer pair(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000034037
DoTS DT.101367739, DT.103563370, DT.110477809, DT.55122881
Consensus CDS Project CCDS20371.1
UniGene 295740
DFCI TC1582716, TC1596119, TC1597403, TC1620336
NIA Mouse Gene Index U042754
Entrez Gene 232237
VEGA Gene Model OTTMUSG00000023856
International Mouse Knockout Project Status Fgd5
Protein
domains
InterPro ID Description
IPR000219 Dbl homology (DH) domain
IPR000306 Zinc finger, FYVE-type
IPR001849 Pleckstrin homology
IPR011011 Zinc finger, FYVE/PHD-type
IPR011993 Pleckstrin homology-type
IPR017455 Zinc finger, FYVE-related
Graphical View of Protein Domain Structure
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" Nature 2002;420():563-573
(Latest) J:121775 Narumiya H et al., "Endocardiogenesis in embryoid bodies: novel markers identified by gene expression profiling." Biochem Biophys Res Commun 2007 Jun 15;357(4):896-902
All references(3)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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