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Abca13 Gene Detail
 Symbol
Name
ID
Abca13
ATP-binding cassette, sub-family A (ABC1), member 13
MGI:2388707


Nomenclature History
Synonyms A930002G16Rik
Genetic Map
Chromosome 11
cytoband A2
 
Mapping data( 3)
Sequence Map
Chr11:9091945-9584262 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF105191
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000005151 VEGA Gene Model | MGI Sequence Detail 492318 C57BL/6J ± Kb
transcript NM_178259 RefSeq | MGI Sequence Detail 16011 -
polypeptide Q5SSE9 UniProt | EBI | MGI Sequence Detail 5034 Not Applicable
For the selected sequences
All sequences(20)
Alleles
and
phenotypes
All alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(1568 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process transport
Component integral to membrane, membrane...
Function ATP binding, ATPase activity...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (3)    Results (3)    Tissues (2)
Theiler Stages: 28
  Assay Type Assays   Results
      RT-PCR 2   2
      Northern blot 1   1
cDNA source data(10)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(15) Genomic(4) cDNA(10) Primer pair(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000004668
DoTS DT.101283368, DT.94280500
Consensus CDS Project CCDS36110.1
UniGene 39270
DFCI TC1589061, TC1604921, TC1699259
NIA Mouse Gene Index U012313
Entrez Gene 268379
VEGA Gene Model OTTMUSG00000005151
International Mouse Knockout Project Status Abca13
Protein
domains
InterPro ID Description
IPR003439 ABC transporter-like
IPR003593 ATPase, AAA+ type, core
IPR017871 ABC transporter, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" Nature 2002;420():563-573
(Latest) J:83207 Barros SA et al., "Molecular structure and characterization of a novel murine ABC transporter, Abca13." Gene 2003 Mar 27;307():191-200
All references(2)
Other
accession IDs
MGI:2144330

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory