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C1ql3 Gene Detail
 Symbol
Name
ID
C1ql3
C1q-like 3
MGI:2387350

Nomenclature History
Synonyms 1110065A22Rik, K100
Genetic Map
Chromosome 2
Syntenic
 
Mapping data( 3)
Sequence Map
Chr2:12925084-12933374 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: complement subcomponent C1q chain A
TreeFam: TF329591
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000011228 VEGA Gene Model | MGI Sequence Detail 8291 C57BL/6J ± Kb
transcript NM_153155 RefSeq | MGI Sequence Detail 3163 -
polypeptide Q9ESN4 UniProt | EBI | MGI Sequence Detail 255 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes 		All alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(53 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component extracellular region
Function protein binding
External Resources: FuncBase
Expression cDNA source data(3)
External Resources: GEO  ArrayExpress 
Molecular
reagents 		All nucleic(4) Genomic(1) cDNA(3)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000049630
Consensus CDS Project CCDS15692.1
DFCI TC1585712, TC1601121, TC1610068
Entrez Gene 227580
VEGA Gene Model OTTMUSG00000011228
International Mouse Knockout Project Status C1ql3
Protein
domains
InterPro ID Description
IPR001073 Complement C1q protein
IPR008160 Collagen triple helix repeat
IPR008983 Tumour necrosis factor-like
Graphical View of Protein Domain Structure
References
(Earliest) J:78792 Koide T et al., "Conformational requirements of collagenous peptides for recognition by the chaperone protein HSP47." J Biol Chem 2000 Sep 8;275(36):27957-63
(Latest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" Nature 2002;420():563-573
All references(4)
Other
accession IDs 		MGI:1916171, MGI:2139035
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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