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Trim47 Gene Detail
 Symbol
Name
ID
Trim47
tripartite motif-containing 47
MGI:1917374

Nomenclature History
Synonyms 2210023F24Rik
Genetic Map
Chromosome 11
Syntenic
 
Mapping data( 1)
Sequence Map
Chr11:115967066-115988524 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF351086
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000003688 VEGA Gene Model | MGI Sequence Detail 21459 C57BL/6J ± Kb
transcript NM_172570 RefSeq | MGI Sequence Detail 1897 -
polypeptide Q8C0E3 UniProt | EBI | MGI Sequence Detail 641 Not Applicable
For the selected sequences
All sequences(32)
Alleles
and
phenotypes 		All alleles(1) : Gene trapped(1)
Polymorphisms SNPs within 2kb(44 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Component cytoplasm, intracellular...
Function metal ion binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (3 records)
Data Summary: Assays (1)    Results (1)    Tissues (1)    Images (2)
Theiler Stages: 17
  Assay Type Assays   Results
      RNA in situ 1   1
cDNA source data(69)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(70) Genomic(1) cDNA(69)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000020773
DoTS DT.101314711, DT.101706883, DT.489563
UniGene 347770
DFCI TC1577717
NIA Mouse Gene Index U033642
Entrez Gene 217333
VEGA Gene Model OTTMUSG00000003688
International Mouse Knockout Project Status Trim47
Protein
domains
InterPro ID Description
IPR000315 Zinc finger, B-box
IPR001841 Zinc finger, RING-type
IPR001870 B302 (SPRY)-like
IPR003877 SPla/RYanodine receptor SPRY
IPR003879 Butyrophylin-like
IPR006574 SPRY-associated
IPR017907 Zinc finger, RING-type, conserved site
IPR018957 Zinc finger, C3HC4 RING-type
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J et al., "Functional annotation of a full-length mouse cDNA collection." Nature 2001 Feb 8;409(6821):685-90
(Latest) J:154029 Munger SC et al., "Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal." Genes Dev 2009 Nov 1;23(21):2521-36
All references(6)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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