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Ddx3y Gene Detail
 Symbol
Name
ID
Ddx3y
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
MGI:1349406

Nomenclature History
Synonyms 8030469F12Rik, D1Pas1-rs1, Dby
Genetic Map
Chromosome Y
cytoband p
 
Mapping data( 2)
Sequence Map
ChrY:598038-623020 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human    (Mammalian Orthology)
Protein SuperFamily: ATP-dependent RNA helicase
TreeFam: TF300364
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000069045 Ensembl Gene Model | MGI Sequence Detail 24983 C57BL/6J ± Kb
transcript NM_012008 RefSeq | MGI Sequence Detail 4640 C57BL/6
polypeptide Q62095 UniProt | EBI | MGI Sequence Detail 658 Not Applicable
For the selected sequences
All sequences(32)
Alleles
and
phenotypes 		All alleles(4) : Gene trapped(4)
Polymorphisms SNPs within 2kb(20 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Component cytoplasm, nucleus...
Function ATP binding, ATP-dependent helicase activity...
External Resources: FuncBase
Expression Literature Summary: (5 records)
Data Summary: Assays (5)    Results (21)    Tissues (8)
Theiler Stages: 21,28
  Assay Type Assays   Results
      RT-PCR 4   14
      Northern blot 1   7
cDNA source data(13)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(17) Genomic(2) cDNA(13) Primer pair(1) Other(1)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000069045
DoTS DT.40181125, DT.87072802, DT.94234119, DT.97393170
Consensus CDS Project CCDS30543.1
DFCI TC1577954, TC1712308
NIA Mouse Gene Index U138825
Entrez Gene 26900
International Mouse Knockout Project Status Ddx3y
Protein
domains
InterPro ID Description
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
IPR001650 DNA/RNA helicase, C-terminal
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014001 DEAD-like helicase, N-terminal
IPR014014 RNA helicase, DEAD-box type, Q motif
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
Graphical View of Protein Domain Structure
References
(Earliest) J:17429 Gee SL et al., "Mouse erythroid cells express multiple putative RNA helicase genes exhibiting high sequence conservation from yeast to mammals." Gene 1994 Mar 25;140(2):171-7
(Latest) J:149994 Hughes DS et al., "Extensive molecular differences between anterior- and posterior-half-sclerotomes underlie somite polarity and spinal nerve segmentation." BMC Dev Biol 2009;9():30
All references(12)
Other
accession IDs 		MGD-MRK-16301, MGI:1924744, MGI:99524
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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