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Usp18 Gene Detail
 Symbol
Name
ID
Usp18
ubiquitin specific peptidase 18
MGI:1344364


Nomenclature History
Synonyms 1110058H21Rik, UBP43
Genetic Map
Chromosome 6
56.0 cM, cytoband F
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr6:121195974-121220935 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Usp18 ± 2 cM)
TreeFam: TF352180
Sequences
Representative Sequences Length Strain/Species Flank
genomic 24110 NCBI Gene Model | MGI Sequence Detail 24962 C57BL/6J ± Kb
transcript NM_011909 RefSeq | MGI Sequence Detail 1778 C57BL/6
polypeptide Q9WTV6 UniProt | EBI | MGI Sequence Detail 368 Not Applicable
For the selected sequences
All sequences(27)
Alleles
and
phenotypes
All alleles(2) : Targeted, other(1) Gene trapped(1)
Homozygous null mutants die prematurely and show cellular necrosis in ependyma and breakdown of blood-brain barrier, hydrocephaly with enlarged ventricles and severe neurological abnormalities including convulsions, tremor, ataxia, rolling, and circling.
Polymorphisms SNPs within 2kb(101 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process ISG15-protein conjugation, modification-dependent protein catabolic process...
Function cysteine-type peptidase activity, hydrolase activity...
External Resources: FuncBase
Expression Literature Summary: (2 records)
cDNA source data(47)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(48) cDNA(47) Other(1)
Microarray probesets(2)
Other database
links
EC 3.1.2.15
Ensembl Gene Model ENSMUSG00000030107
DoTS DT.490235
Consensus CDS Project CCDS20489.1
UniGene 326911
DFCI TC1579171
NIA Mouse Gene Index U007356
Entrez Gene 24110
International Mouse Knockout Project Status Usp18
Protein
domains
InterPro ID Description
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:53884 Liu LQ et al., "A novel ubiquitin-specific protease, UBP43, cloned from leukemia fusion protein AML1-ETO-expressing mice, functions in hematopoietic cell differentiation." Mol Cell Biol 1999 Apr;19(4):3029-38
(Latest) J:152613 Sarasin-Filipowicz M et al., "Alpha interferon induces long-lasting refractoriness of JAK-STAT signaling in the mouse liver through induction of USP18/UBP43." Mol Cell Biol 2009 Sep;29(17):4841-51
All references(17)
Other
accession IDs
MGI:1916032, MGI:2141633

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory