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Csf1r Gene Detail
 Symbol
Name
ID
Csf1r
colony stimulating factor 1 receptor
MGI:1339758


Nomenclature History
Synonyms CD115, CSF-1R, Csfmr, Fim-2, Fms, M-CSFR
Genetic Map
Chromosome 18
30.0 cM, cytoband D
Detailed Genetic Map ± 1 cM
 
Mapping data( 25)

Sequence Map
Chr18:61265226-61290788 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cat, domestic; cattle; dog, domestic; horse; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Csf1r ± 2 cM)
Protein SuperFamily: tyrosine-protein kinase, CSF-1/PDGF receptor type
TreeFam: TF325768
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000014918 VEGA Gene Model | MGI Sequence Detail 25563 C57BL/6J ± Kb
transcript NM_001037859 RefSeq | MGI Sequence Detail 3875 C57BL/6
polypeptide P09581 UniProt | EBI | MGI Sequence Detail 977 Not Applicable
For the selected sequences
All sequences(63)
Alleles
and
phenotypes
All alleles(2) : Targeted, knock-out(1) Targeted, other(1)
Homozygotes for a targeted null mutation exhibit skeletal, sensory, and reproductive abnormalities associated with severe deficiencies in osteoclasts, macrophages, and brain microglia.
Polymorphisms RFLP(10) SNPs within 2kb(127 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (23 annotations)
Process protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway...
Component integral to membrane, integral to plasma membrane...
Function ATP binding, cytokine binding...
External Resources: FuncBase
Expression Literature Summary: (27 records)
Data Summary: Assays (14)    Results (110)    Tissues (68)    Images (2)
Theiler Stages: 4,10,11,12,13,14,15,17,18,19,20,21,23,24,25,26,28
  Assay Type Assays   Results
      RT-PCR 9   88
      Immunohistochemistry 2   8
      Nuclease S1 1   5
      Northern blot 2   9
cDNA source data(99)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents
All nucleic(120) Genomic(8) cDNA(103) Primer pair(6) Other(3) Antibodies(1)
Microarray probesets(4)
Other database
links
EC 2.7.10.1
Ensembl Gene Model ENSMUSG00000024621
DoTS DT.101139906, DT.101163850, DT.101406752, DT.101406754, DT.110764711, DT.491839, DT.55147791, DT.97364722, DT.97364723
Consensus CDS Project CCDS29280.1
UniGene 22574
PDB 3EJJ
DFCI TC1573741, TC1607361, TC1637006, TC1687081, TC1695820
Entrez Gene 12978
VEGA Gene Model OTTMUSG00000014918
International Mouse Knockout Project Status Csf1r
Protein
domains
InterPro ID Description
IPR000601 PKD
IPR000719 Protein kinase, catalytic domain
IPR001245 Tyrosine-protein kinase, catalytic domain
IPR001824 Tyrosine-protein kinase, receptor class III, conserved site
IPR003598 Immunoglobulin subtype 2
IPR003599 Immunoglobulin subtype
IPR007110 Immunoglobulin-like
IPR008266 Tyrosine-protein kinase, active site
IPR011009 Protein kinase-like domain
IPR013098 Immunoglobulin I-set
IPR013783 Immunoglobulin-like fold
IPR016243 Tyrosine-protein kinase, CSF-1/PDGF receptor
IPR017441 Protein kinase, ATP binding site
IPR020635 Tyrosine-protein kinase, subgroup, catalytic domain
IPR020685 Tyrosine-protein kinase
IPR020729 Tyrosine-protein kinase, macrophage colony-stimulating factor 1 receptor
Graphical View of Protein Domain Structure
References
(Earliest) J:6867 Muller R et al., "Differential expression of cellular oncogenes during pre- and postnatal development of the mouse." Nature 1982 Oct 14;299(5884):640-4
(Latest) J:155668 Ginhoux F et al., "The origin and development of nonlymphoid tissue CD103+ DCs." J Exp Med 2009 Dec 21;206(13):3115-30
All references(95)
Other
accession IDs
MGD-MRK-2192, MGD-MRK-9798, MGD-MRK-9845, MGI:2147208, MGI:88535

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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