About   Help   FAQ
Cdh17 Gene Detail
 Symbol
Name
ID
Cdh17
cadherin 17
MGI:1095414


Nomenclature History
Synonyms BILL-cadherin, HPT-1, LI-cadherin
Genetic Map
Chromosome 4
cytoband A2
 
Mapping data( 1)
Sequence Map
Chr4:11685294-11745042 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF316817
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000004521 VEGA Gene Model | MGI Sequence Detail 59749 C57BL/6J ± Kb
transcript NM_019753 RefSeq | MGI Sequence Detail 3475 C57BL/6
polypeptide Q9R100 UniProt | EBI | MGI Sequence Detail 827 Not Applicable
For the selected sequences
All sequences(21)
Alleles
and
phenotypes
All alleles(2) : Targeted, knock-out(1) Gene trapped(1)
Homozygous mutant mice exhibit impaired B lymphocyte development and impaired IgG1 and IgG3 antibody response to T-independent antigen.
Polymorphisms SNPs within 2kb(216 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process calcium-dependent cell-cell adhesion, cell adhesion...
Component integral to membrane, integral to plasma membrane...
Function calcium ion binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (6)    Results (38)    Tissues (31)    Images (14)
Theiler Stages: 10,17,18,19,20,21,22,23,24,25,28
  Assay Type Assays   Results
      Western blot 1   2
      RT-PCR 2   6
      Immunohistochemistry 1   15
      Northern blot 2   15
cDNA source data(14)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000028217
DoTS DT.101715332, DT.102532356, DT.487852
Consensus CDS Project CCDS17972.1
UniGene 33402
DFCI TC1580824, TC1607544
NIA Mouse Gene Index U004072
Entrez Gene 12557
VEGA Gene Model OTTMUSG00000004521
International Mouse Knockout Project Status Cdh17
Protein
domains
InterPro ID Description
IPR002126 Cadherin
IPR015919 Cadherin-like
IPR020894 Cadherin conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:33453 Dantzig AH et al., "Association of intestinal peptide transport with a protein related to the cadherin superfamily." Science 1994 Apr 15;264(5157):430-3
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(8)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
02/06/2010
MGI_4.32
Web browser compatibility
The Jackson Laboratory