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Vnn1 Gene Detail
 Symbol
Name
ID
Vnn1
vanin 1
MGI:108395


Nomenclature History
Synonyms pantetheinase, V-1
Genetic Map
Chromosome 10
cytoband A1-B2
 
Mapping data( 4)
Sequence Map
Chr10:23614589-23625149 bp, + strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: biotinidase, eukaryotic type
TreeFam: TF323645
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000037440 Ensembl Gene Model | MGI Sequence Detail 10561 C57BL/6J ± Kb
transcript NM_011704 RefSeq | MGI Sequence Detail 2416 C57BL/6
polypeptide Q9Z0K8 UniProt | EBI | MGI Sequence Detail 512 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes
All alleles(1) : Targeted, knock-out(1)
Mice homozygous for disruptions of this gene develop normally and so no abnormalities in the maturation of lymphoid organs. However, membrane bound pantetheinase is absent in livers and kidneys resuulting in an absence of cysteamine in these organs.
Polymorphisms SNPs within 2kb(171 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process acute inflammatory response, anti-apoptosis...
Component anchored to membrane, integral to membrane...
Function GPI anchor binding, hydrolase activity...
External Resources: FuncBase
Expression Literature Summary: (10 records)
Data Summary: Assays (4)    Results (60)    Tissues (24)    Images (16)
Theiler Stages: 18,20,21,22,24
  Assay Type Assays   Results
      RT-PCR 2   46
      RNA in situ 1   2
      Immunohistochemistry 1   12
cDNA source data(24)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(28) Genomic(1) cDNA(24) Primer pair(2) Other(1) Antibodies(1)
Microarray probesets(2)
Other database
links
EC 3.5.1.92
Ensembl Gene Model ENSMUSG00000037440
DoTS DT.489238
Consensus CDS Project CCDS35868.1
UniGene 27154
DFCI TC1581156
NIA Mouse Gene Index U011343
Entrez Gene 22361
International Mouse Knockout Project Status Vnn1
Protein
domains
InterPro ID Description
IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
IPR012101 Biotinidase, eukaryotic
Graphical View of Protein Domain Structure
References
(Earliest) J:37066 Aurrand-Lions M et al., "Vanin-1, a novel GPI-linked perivascular molecule involved in thymus homing." Immunity 1996 Nov;5(5):391-405
(Latest) J:137896 Roisin-Bouffay C et al., "Mouse vanin-1 is cytoprotective for islet beta cells and regulates the development of type 1 diabetes." Diabetologia 2008 Jul;51(7):1192-1201
All references(26)
Other
accession IDs
MGD-MRK-37437

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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