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Cd6 Gene Detail
 Symbol
Name
ID
Cd6
CD6 antigen
MGI:103566

Nomenclature History
Genetic Map
Chromosome 19
5.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr19:10863829-10904548 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cd6 ± 2 cM)
Protein SuperFamily: T-cell differentiation antigen CD6
TreeFam: TF329295
Sequences
Representative Sequences Length Strain/Species Flank
genomic 12511 NCBI Gene Model | MGI Sequence Detail 40720 C57BL/6J ± Kb
transcript NM_009852 RefSeq | MGI Sequence Detail 3034 C57BL/6
polypeptide Q61003 UniProt | EBI | MGI Sequence Detail 665 Not Applicable
For the selected sequences
All sequences(30)
Alleles
and
phenotypes 		All alleles(3) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(1)
Polymorphisms SNPs within 2kb(200 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell adhesion
Component integral to membrane, membrane...
Function protein binding, scavenger receptor activity...
External Resources: FuncBase
Expression cDNA source data(20)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(24) Genomic(3) cDNA(21)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000024670
DoTS DT.101243726, DT.101376318, DT.101376319, DT.521588, DT.97361816
Consensus CDS Project CCDS37917.1
UniGene 290897
DFCI TC1579211, TC1594902, TC1595754
NIA Mouse Gene Index U038811
Entrez Gene 12511
International Mouse Knockout Project Status Cd6
Protein
domains
InterPro ID Description
IPR001190 Speract/scavenger receptor
IPR017448 Speract/scavenger receptor related
Graphical View of Protein Domain Structure
References
(Earliest) J:20989 Wee S et al., "Characterization of a CD6 ligand(s) expressed on human- and murine-derived cell lines and murine lymphoid tissues." Cell Immunol 1994 Oct 15;158(2):353-64
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(12)
Other
accession IDs 		MGD-MRK-24451
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory