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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
6221

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VPS35 HGNC:13487 (HGNC)
55737 (Entrez Gene)
601501 (OMIM)
Chr16 q12 Chr16:46659677-46689232 (-)
GRCh38
Parkinson Disease 17; PARK17
Q96QK1 (UniProt | EBI)
NM_018206 (RefSeq)
mouse Vps35 MGI:1890467 (MGI)
65114 (Entrez Gene)
Gene Tree
VISTA-Point
Chr8 41.61 cM Chr8:85260392-85299497 (-)
GRCm38
65114 (NCBI Gene Model)
Q9EQH3 (UniProt | EBI)
NM_022997 (RefSeq)
rat Vps35 25479 (Entrez Gene)
Chr19 q11 NP_001099188 (RefSeq)
NM_001105718 (RefSeq)
chimpanzee VPS35 465139 (Entrez Gene)
Chr16 XP_001161257 (RefSeq)
rhesus macaque VPS35 717394 (Entrez Gene)
Chr20 XP_001108828 (RefSeq)
cattle VPS35 521864 (Entrez Gene)
Chr18 Q2HJG5 (UniProt | EBI)
NM_001046258 (RefSeq)
dog VPS35 475346 (Entrez Gene)
Chr15 XP_532570 (RefSeq)
chicken VPS35 415750 (Entrez Gene)
Chr11 NP_001005842 (RefSeq)
NM_001005842 (RefSeq)
zebrafish vps35 561697 (Entrez Gene)
Chr7 NP_001020688 (RefSeq)
NM_001025517 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory