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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
40808

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CLCA4 HGNC:2018 (HGNC)
22802 (Entrez Gene)
Chr1 p31-p22 Chr1:86547015-86580754 (+)
GRCh38
Q14CN2 (UniProt | EBI)
NM_012128 (RefSeq)
mouse AI747448 MGI:2139790 (MGI)
99709 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 69.2 cM Chr3:144910921-144932529 (-)
GRCm38
OTTMUSG00000033449 (VEGA)
OTTMUSP00000045226 (VEGA)
OTTMUST00000084037 (VEGA)
Clca6 MGI:2139744 (MGI)
99663 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 69.22 cM Chr3:144952480-144975045 (-)
GRCm38
OTTMUSG00000031904 (VEGA)
OTTMUSP00000042144 (VEGA)
OTTMUST00000079097 (VEGA)
rat Clca4 362053 (Entrez Gene)
Chr2 q44 NP_958822 (RefSeq)
NM_201419 (RefSeq)
chimpanzee CLCA4 469372 (Entrez Gene)
Chr1 XP_524757 (RefSeq)
rhesus macaque CLCA4 712123 (Entrez Gene)
Chr1 XP_001109489 (RefSeq)
cattle CLCA4 507504 (Entrez Gene)
Chr3 NP_001029472 (RefSeq)
NM_001034300 (RefSeq)
dog CLCA4 612508 (Entrez Gene)
Chr6 XP_005622030 (RefSeq)
zebrafish clca1 334289 (Entrez Gene)
Chr15 XP_002664610 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/15/2014
MGI 5.17
The Jackson Laboratory