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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
4216

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CHST4 HGNC:1972 (HGNC)
10164 (Entrez Gene)
Chr16 q22.2 Chr16:71526120-71538590 (+)
GRCh38
Q8NCG5 (UniProt | EBI)
NM_005769 (RefSeq)
mouse Chst4 MGI:1349479 (MGI)
26887 (Entrez Gene)
Gene Tree
VISTA-Point
Chr8 57.38 cM Chr8:110029075-110039334 (-)
GRCm38
26887 (NCBI Gene Model)
Q9R1I1 (UniProt | EBI)
NM_011998 (RefSeq)
rat Chst4 307838 (Entrez Gene)
Chr19 q12 NP_001100897 (RefSeq)
NM_001107427 (RefSeq)
chimpanzee CHST4 468019 (Entrez Gene)
Chr16 XP_001171156 (RefSeq)
rhesus macaque CHST4 708116 (Entrez Gene)
Chr20 XP_001106318 (RefSeq)
cattle CHST4 539063 (Entrez Gene)
Chr18 NP_001069613 (RefSeq)
NM_001076145 (RefSeq)
dog CHST4 489722 (Entrez Gene)
Chr5 NP_001274059 (RefSeq)
NM_001287130 (RefSeq)
chicken CHST4 427567 (Entrez Gene)
Chr11 XP_004944421 (RefSeq)
western clawed frog LOC100496630 100496630 (Entrez Gene)
ChrUN XP_004914310 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory