ABCA1 Vertebrate HGNC

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Vertebrate Homology

Source

Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	ABCA1	HGNC:29 (HGNC) 19 (Entrez Gene) 600046 (OMIM) ABCA1 (Alliance of Genome Resources)	Chr9 q31.1	Chr9:104781006-104928155 (-) GRCh38	Alzheimer's disease coronary artery disease hypolipoproteinemia obesity primary hypoalphalipoproteinemia 1 Tangier disease type 2 diabetes mellitus	O95477 (UniProt \| EBI) NM_005502 (RefSeq)
mouse	Abca1	MGI:99607 (MGI) 11303 (Entrez Gene) Gene Tree Abca1 (Alliance of Genome Resources)	Chr4 28.57 cM	Chr4:53030787-53159895 (-) GRCm39	Tangier disease	ENSMUSG00000015243 (Ensembl Gene Model) ENSMUSP00000030010 (Ensembl) ENSMUST00000030010 (Ensembl)
rat	Abca1	RGD:631344 (Rat Genome Database) 313210 (Entrez Gene) Abca1 (Alliance of Genome Resources)	Chr5 q23-q24			NP_835196 (RefSeq) NM_178095 (RefSeq)
zebrafish	abca1a	ZDB-GENE-031006-12 (Zebrafish Model Organism Database) 558924 (Entrez Gene) abca1a (Alliance of Genome Resources)	Chr1			NP_001296394 (RefSeq) NM_001145689 (RefSeq)
zebrafish	abca1b	ZDB-GENE-030131-9826 (Zebrafish Model Organism Database) 100136868 (Entrez Gene) abca1b (Alliance of Genome Resources)	Chr14			NP_001108058 (RefSeq) NM_001114586 (RefSeq)