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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2891

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LDB1 HGNC:6532 (HGNC)
8861 (Entrez Gene)
603451 (OMIM)
Chr10 q24-q25 Chr10:102106558-102120453 (-)
GRCh38
Q86U70 (UniProt | EBI)
NM_003893 (RefSeq)
mouse Ldb1 MGI:894762 (MGI)
16825 (Entrez Gene)
Gene Tree
VISTA-Point
Chr19 38.75 cM Chr19:46032593-46045214 (-)
GRCm38
Nail-Patella Syndrome; NPS
OTTMUSG00000033442 (VEGA)
OTTMUSP00000045212 (VEGA)
OTTMUST00000084014 (VEGA)
rat Ldb1 309447 (Entrez Gene)
Chr1 q54 NP_001101071 (RefSeq)
NM_001107601 (RefSeq)
chimpanzee LDB1 450694 (Entrez Gene)
Chr10 XP_009457395 (RefSeq)
rhesus macaque LDB1 712653 (Entrez Gene)
Chr9 NP_001253346 (RefSeq)
NM_001266417 (RefSeq)
cattle LDB1 526472 (Entrez Gene)
Chr26 XP_604843 (RefSeq)
dog LDB1 477804 (Entrez Gene)
Chr28 XP_850926 (RefSeq)
chicken LDB1 395952 (Entrez Gene)
Chr6 O42252 (UniProt | EBI)
NM_205070 (RefSeq)
western clawed frog ldb1 407886 (Entrez Gene)
ChrUN Q6NVL6 (UniProt | EBI)
NM_213678 (RefSeq)
zebrafish ldb1b 30576 (Entrez Gene)
Chr11 NP_571388 (RefSeq)
NM_131313 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory