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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
37941

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human STX1A HGNC:11433 (HGNC)
6804 (Entrez Gene)
186590 (OMIM)
Chr7 q11.23 Chr7:73699205-73719702 (-)
GRCh38
Q16623 (UniProt | EBI)
NM_004603 (RefSeq)
mouse Stx1a MGI:109355 (MGI)
20907 (Entrez Gene)
Gene Tree
VISTA-Point
Chr5 74.95 cM Chr5:135023482-135051100 (+)
GRCm38
OTTMUSG00000016270 (VEGA)
OTTMUSP00000017437 (VEGA)
OTTMUST00000039031 (VEGA)
rat Stx1a 116470 (Entrez Gene)
Chr12 q12 P32851 (UniProt | EBI)
NM_053788 (RefSeq)
chimpanzee STX1A 742605 (Entrez Gene)
Chr7 XP_001146754 (RefSeq)
rhesus macaque STX1A 574205 (Entrez Gene)
Chr3 NP_001028037 (RefSeq)
NM_001032865 (RefSeq)
cattle STX1A 788566 (Entrez Gene)
Chr25 P32850 (UniProt | EBI)
NM_001083798 (RefSeq)
dog STX1A 100855965 (Entrez Gene)
Chr6 XP_005621021 (RefSeq)
western clawed frog stx1a 779637 (Entrez Gene)
ChrUN NP_001072191 (RefSeq)
NM_001078723 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory