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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
8409

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HOXD9 HGNC:5140 (HGNC)
3235 (Entrez Gene)
142982 (OMIM)
HOXD9 (MyGene.info)
HGNC homology
Chr2 q31.1 Chr2:176122685-176124917 (+)
GRCh38.p7
P28356 (UniProt | EBI)
NM_014213 (RefSeq)
mouse Hoxd9 MGI:96210 (MGI)
15438 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 44.13 cM Chr2:74697727-74700208 (+)
GRCm38
OTTMUSG00000016552 (VEGA)
OTTMUSP00000017844 (VEGA)
OTTMUST00000040004 (VEGA)
rat Hoxd9 688999 (Entrez Gene)
Chr3 q23 B5DFK3 (UniProt | EBI)
NM_001173469 (RefSeq)
chimpanzee HOXD9 100612972 (Entrez Gene)
Chr2B XP_016805570 (RefSeq)
cattle HOXD9 100295338 (Entrez Gene)
Chr2 XP_002685334 (RefSeq)
chicken HOXD9 771214 (Entrez Gene)
Chr7 P24340 (UniProt | EBI)
zebrafish hoxd9a 30350 (Entrez Gene)
Chr9 Q9PWM6 (UniProt | EBI)
NM_131126 (RefSeq)
frog, western clawed hoxd9 100497640 (Entrez Gene)
Chr9 XP_012826755 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/31/2018
MGI 6.12
The Jackson Laboratory