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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
69152

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human OPN4 HGNC:14449 (HGNC)
94233 (Entrez Gene)
606665 (OMIM)
Melanopsin (MyGene.info)
HGNC homology
Chr10 q23.2 Chr10:86653495-86666460 (+)
GRCh38.p7
Q9UHM6 (UniProt | EBI)
NM_001030015 (RefSeq)
mouse Opn4 MGI:1353425 (MGI)
30044 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr14 20.83 cM Chr14:34590618-34600142 (-)
GRCm38
30044 (NCBI Gene Model)
Q9QXZ9 (UniProt | EBI)
NM_001128599 (RefSeq)
rat Opn4 192223 (Entrez Gene)
Chr16 p15 Q8R456 (UniProt | EBI)
NM_138860 (RefSeq)
chimpanzee OPN4 735531 (Entrez Gene)
Chr10
cattle OPN4 515152 (Entrez Gene)
Chr28 NP_001179328 (RefSeq)
NM_001192399 (RefSeq)
dog OPN4 611027 (Entrez Gene)
Chr4 XP_022273694 (RefSeq)
chicken OPN4 423609 (Entrez Gene)
Chr6 NP_001038118 (RefSeq)
NM_001044653 (RefSeq)
frog, western clawed opn4 100491785 (Entrez Gene)
Chr7 XP_002937616 (RefSeq)
macaque, rhesus OPN4 699800 (Entrez Gene)
Chr9 XP_015002579 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/14/2017
MGI 6.11
The Jackson Laboratory