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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
49974

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SPATA16 HGNC:29935 (HGNC)
83893 (Entrez Gene)
609856 (OMIM)
HGNC homology
Chr3 q26.31 Chr3:172889357-173141268 (-)
GRCh38.p7
spermatogenic failure 6
Q9BXB7 (UniProt | EBI)
NM_031955 (RefSeq)
mouse Spata16 MGI:1918112 (MGI)
70862 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr3 10.74 cM Chr3:26637620-26983212 (+)
GRCm38
male infertility
ENSMUSG00000039335 (Ensembl Gene Model)
ENSMUSP00000043378 (Ensembl)
ENSMUST00000047005 (Ensembl)
chimpanzee SPATA16 460854 (Entrez Gene)
Chr3 NP_001233350 (RefSeq)
NM_001246421 (RefSeq)
cattle SPATA16 538046 (Entrez Gene)
Chr1 XP_002684982 (RefSeq)
dog SPATA16 478689 (Entrez Gene)
Chr34 XP_005639983 (RefSeq)
chicken SPATA16 429157 (Entrez Gene)
Chr9 XP_025009533 (RefSeq)
macaque, rhesus SPATA16 693927 (Entrez Gene)
Chr2 XP_014987096 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory