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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
49565

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDHA5 HGNC:8671 (HGNC)
56143 (Entrez Gene)
606311 (OMIM)
PCDHA5 (MyGene.info)
HGNC homology
Chr5 q31.3 Chr5:140821776-141012344 (+)
GRCh38.p7
Q9Y5H7 (UniProt | EBI)
NM_018908 (RefSeq)
mouse Pcdha5 MGI:1298371 (MGI)
12941 (Entrez Gene)
Gene Tree
VISTA-Point
Chr18 19.46 cM Chr18:36960440-37187657 (+)
GRCm38
12941 (NCBI Gene Model)
NP_034089 (RefSeq)
NM_009959 (RefSeq)
rat Pcdha5 393087 (Entrez Gene)
Chr18 p11 NP_955799 (RefSeq)
NM_199505 (RefSeq)
chimpanzee PCDHA5 100034712 (Entrez Gene)
Chr5 Q5DRE7 (UniProt | EBI)
NM_001364702 (RefSeq)
cattle LOC100847156 100847156 (Entrez Gene)
Chr7 XP_015327752 (RefSeq)
macaque, rhesus PCDHA5 692083 (Entrez Gene)
Chr6 NP_001185598 (RefSeq)
NM_001198669 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory