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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
37643

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDPK1 HGNC:8816 (HGNC)
5170 (Entrez Gene)
605213 (OMIM)
Chr16 p13.3 Chr16:2537964-2603190 (+)
GRCh38
O15530 (UniProt | EBI)
NM_002613 (RefSeq)
mouse Pdpk1 MGI:1338068 (MGI)
18607 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 12.23 cM Chr17:24073680-24150924 (-)
GRCm38
Diabetes Mellitus, Insulin-Dependent; IDDM
OTTMUSG00000016280 (VEGA)
OTTMUSP00000017452 (VEGA)
OTTMUST00000039074 (VEGA)
rat Pdpk1 81745 (Entrez Gene)
Chr10 q12 O55173 (UniProt | EBI)
NM_031081 (RefSeq)
chimpanzee PDPK1 467875 (Entrez Gene)
Chr16 XP_003952817 (RefSeq)
cattle PDPK1 100138102 (Entrez Gene)
Chr25 XP_001788715 (RefSeq)
dog PDPK1 479875 (Entrez Gene)
Chr6 XP_005621734 (RefSeq)
chicken PDPK1 416588 (Entrez Gene)
Chr14 NP_001012547 (RefSeq)
NM_001012529 (RefSeq)
western clawed frog pdpk1 779524 (Entrez Gene)
ChrUN XP_002938460 (RefSeq)
zebrafish pdpk1b 403000 (Entrez Gene)
Chr24 NP_991262 (RefSeq)
NM_205699 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory