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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
175

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDX1 HGNC:6107 (HGNC)
3651 (Entrez Gene)
600733 (OMIM)
Chr13 q12.1 Chr13:27920031-27926314 (+)
GRCh38
Diabetes Mellitus, Noninsulin-Dependent; NIDDM
Diabetes Mellitus, Permanent Neonatal; PNDM
Maturity-Onset Diabetes of the Young, Type 4; MODY4
Pancreatic Agenesis 1; PAGEN1
P52945 (UniProt | EBI)
NM_000209 (RefSeq)
mouse Pdx1 MGI:102851 (MGI)
18609 (Entrez Gene)
Gene Tree
VISTA-Point
Chr5 86.84 cM Chr5:147269959-147278008 (+)
GRCm38
Diabetes Mellitus, Insulin-Dependent; IDDM
Maturity-Onset Diabetes of the Young, Type 4; MODY4
Maturity-Onset Diabetes of the Young; MODY
OTTMUSG00000037552 (VEGA)
OTTMUSP00000054127 (VEGA)
OTTMUST00000096808 (VEGA)
rat Pdx1 29535 (Entrez Gene)
Chr12 P52947 (UniProt | EBI)
NM_022852 (RefSeq)
chimpanzee PDX1 452507 (Entrez Gene)
Chr13 A2T756 (UniProt | EBI)
NM_001081478 (RefSeq)
rhesus macaque PDX1 710936 (Entrez Gene)
Chr17 XP_001096758 (RefSeq)
cattle PDX1 538927 (Entrez Gene)
Chr12 NP_001179065 (RefSeq)
NM_001192136 (RefSeq)
dog PDX1 493994 (Entrez Gene)
Chr25 NP_001271400 (RefSeq)
NM_001284471 (RefSeq)
chicken PDX1 771348 (Entrez Gene)
Chr1 XP_001234636 (RefSeq)
western clawed frog pdx1 100490648 (Entrez Gene)
ChrUN XP_002934065 (RefSeq)
zebrafish pdx1 30721 (Entrez Gene)
Chr24 NP_571518 (RefSeq)
NM_131443 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory