How do I obtain FASTA sequence files for mouse genes with GO annotations in common?
You can use the Mouse Sequence Query Form to retrieve sequences from a specific region of the mouse genome, or sequences associated with a human disease, mouse phenotype, or function.
Accessing the Mouse Sequence Query Form
On most MGI pages, you can access the Mouse Sequence Query Form from the Search menu as shown in the image at right.

For this tutorial, open the Mouse Sequence Query Form in a new window. Scroll down this page for further instructions.

Search Menu - Sequence

Example 1. Finding all polypeptide sequences annotated to Gene Ontology term "histone deacetylation"
  1. Select Polypeptide from the Sequence Type pick list.

  2. Type the term histone deacetylation in the Gene Classifications text box.

  3. Click Search.
Sequences QF Screen Shot
  1. Click the Select all button to select all sequences.

  2. Click the Go button to download the selected sequences in FASTA format.
Search Results Screen Shot