| Deltagen Knockout Mice Phenotypic Data Download Package Summary |
Mouse Genome Informatics
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Each zipped package contains data and image files for one line of knock-out mice. The data and format of most of the files were provided by Deltagen, Inc. MGI has not verified the content or altered the format of the material except in specific cases described below. The name of the zip file is the MGI Accession ID of a gene whose data are within. After you open the zip file, the name of the main folder is the MGI Accession ID number of the gene and the gene symbol current at the time we created the package. For example, MGI1891209.zip opens a main folder named MGI1891209_Efemp2.
Main folder
When opened, the main folder contains the following files and folders:
File or Folder Name | Description
--- | ---
Tnnn_Summaries.doc | Deltagen's summary of test results in Microsoft Word format.
Tnnn_Molecular_Biology.doc | Deltagen's summary of genotyping results in Microsoft Word format.
Genotyping_Overview.doc | Deltagen's description of their genotyping methods in Microsoft Word format.
Image_ID_Instructions.doc | Instructions for finding individual image JPG files in their folder structure; in Microsoft Word format . Note: all images are linked from Excel spreadsheets in the Images folder. You do not need these instructions to view an image.
Tnnn_Keyword_Annotations.xls | Phenotypic keywords for the knock-out line in Microsoft Excel spreadsheet format.
AboutTheDownload.html | This file.
WhichAlleleIsThis.html WhichAlleleIsThis.txt | Contains the Deltagen T-number and corresponding symbols, names, and MGI accession ID numbers for the gene and allele. HTML format contains links to MGI web pages; TXT format is text-only. All knock-out lines' identification data appear in the table below.
Images folder | Folder containing files related to data and images; see below.
Datasets folder | Folder containing files related only to data; see below.
Images folder
The Images folder contains up to four Excel files of phenotypic data. Each file contains image file identifiers linked to image files. Open the Excel spreadsheet whose name matches the data you desire, and click on the links to view images associated with the data. ("Tnnn" is the Deltagen T-number of the knock-out line.)
File or Folder Name | Description | Notes
--- | --- | ---
Tnnn_Densitometer_images.xls | Data with links to images |
Tnnn_LacZ_images.xls | Data with links to images |
Tnnn_EmbryonicDevelopment_images.xls | Data with links to images |
Tnnn_Histopathology_images.xls | Data with links to images |
Densitometer | Folder containing the image files | You do not need to open any additional folders to view the images. Instructions for locating an individual image JPG file are contained in Image_ID_instructions.doc if you want to understand the folder structure where the image files are stored.
Lacz | Folder containing the image files
Embryonic_development | Folder containing the image files
Histopathology_images | Folder containing the image files
You may encounter the following abbreviations in the data: N/A - Not applicable NOS - Not otherwise specified NSA - Negative symptom assessment
Datasets folder
The Datasets folder contains additional sets of phenotypic and expression data. These Excel spreadsheets may list image file identifiers but do not contain links to the images, and may repeat data found in the file of the same name in the Images folder. One or more of the following may be included in this zipped data package: ("Tnnn" is the Deltagen T-number of the knock-out line.)
File Name | Description
--- | ---
Tnnn_Densitometer.xls | Data and image identifier numbers (not linked)
Tnnn_Embryonic_Development.xls | Data and image identifier numbers (not linked)
Tnnn_Expression_Analysis.xls | Data
Tnnn_Hematology.xls | Data
Tnnn_Histopathology.xls | Data and image identifier numbers (not linked)
Tnnn_Mouse_Metrics.xls | Data
Tnnn_Necropsy.xls | Data
Tnnn_Overall_Behavior.xls | Data
Tnnn_Physical_Exam.xls | Data
Tnnn_RT-PCR.xls | Includes unlinked JPG image identifier
Tnnn_RT-PCR_Conditions.xls | Data
Tnnn_RT-PCR.jpg | Image associated with the Tnnn_RT-PCR.xls file
Tnnn_Serum_Chemistry.xls | Data
Tnnn_TaqMan_-_Expression.xls | Data

The table below lists all Deltagen alleles with their corresponding Deltagen ID numbers and MGI allele and gene identity information.

Marker | Marker Name | Marker ID | Allele | Allele ID | Deltagen_ID
--- | --- | --- | --- | --- | ---
Acvrl1 | activin A receptor, type II-like 1 | MGI:1338946 | Acvrl1tm1Dgen | MGI:3604490 | T1443
Adamts4 | a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 | MGI:1339949 | Adamts4tm1Dgen | MGI:3604481 | T1231
Adamts5 | a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) | MGI:1346321 | Adamts5tm1Dgen | MGI:3604488 | T1232
Adcy3 | adenylate cyclase 3 | MGI:99675 | Adcy3tm1Dgen | MGI:3604495 | T1520
Adcy4 | adenylate cyclase 4 | MGI:99674 | Adcy4tm1Dgen | MGI:3604519 | T1521
Adcy7 | adenylate cyclase 7 | MGI:102891 | Adcy7tm1Dgen | MGI:3604498 | T1519
Adipor1 | adiponectin receptor 1 | MGI:1919924 | Adipor1tm1Dgen | MGI:3604517 | T345
Adipor2 | adiponectin receptor 2 | MGI:93830 | Adipor2tm1Dgen | MGI:3604502 | T1962
Arts1 | type 1 tumor necrosis factor receptor shedding aminopeptidase regulator | MGI:1933403 | Arts1tm1Dgen | MGI:3604456 | T108
Avpr1a | arginine vasopressin receptor 1A | MGI:1859216 | Avpr1atm1Dgen | MGI:3604506 | T672
Avpr1b | arginine vasopressin receptor 1B | MGI:1347010 | Avpr1btm1Dgen | MGI:3604516 | T824
Axl | AXL receptor tyrosine kinase | MGI:1347244 | Axltm1Dgen | MGI:3604510 | T1453
B3galnt1 | UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 | MGI:1349405 | B3galnt1tm1Dgen | MGI:3604458 | T28
B3galt2 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 | MGI:1349461 | B3galt2tm1Dgen | MGI:3604457 | T31
B3galt5 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 | MGI:2136878 | B3galt5tm1Dgen | MGI:3604460 | T2208
B3gnt2 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 | MGI:1889505 | B3gnt2tm1Dgen | MGI:3604461 | T21
B3gnt3 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 | MGI:2152535 | B3gnt3tm1Dgen | MGI:3604463 | T25
Bai2 | brain-specific angiogenesis inhibitor 2 | MGI:2451244 | Bai2tm1Dgen | MGI:3604512 | T1055
Bdkrb1 | bradykinin receptor, beta 1 | MGI:88144 | Bdkrb1tm1Dgen | MGI:3604513 | T609
Birc1a | baculoviral IAP repeat-containing 1a | MGI:1298223 | Birc1atm1Dgen | MGI:3604514 | T693
Cacna1c | calcium channel, voltage-dependent, L type, alpha 1C subunit | MGI:103013 | Cacna1ctm1Dgen | MGI:3604527 | T1122
Cacna2d3 | calcium channel, voltage-dependent, alpha2/delta subunit 3 | MGI:1338890 | Cacna2d3tm1Dgen | MGI:3604520 | T12
Cacng3 | calcium channel, voltage-dependent, gamma subunit 3 | MGI:1859165 | Cacng3tm1Dgen | MGI:3604524 | T1128
Cacng4 | calcium channel, voltage-dependent, gamma subunit 4 | MGI:1859167 | Cacng4tm1Dgen | MGI:3604526 | T1127
Calcr | calcitonin receptor | MGI:101950 | Calcrtm1Dgen | MGI:3604511 | T612
Capn5 | calpain 5 | MGI:1100859 | Capn5tm1Dgen | MGI:3604529 | T705
Capn7 | calpain 7 | MGI:1338030 | Capn7tm1Dgen | MGI:3604530 | T565
Casp12 | caspase 12 | MGI:1312922 | Casp12tm1Dgen | MGI:3604507 | T713
Cck | cholecystokinin | MGI:88297 | Ccktm1Dgen | MGI:3604503 | T722
Ccr1l1 | chemokine (C-C motif) receptor 1-like 1 | MGI:104617 | Ccr1l1tm1Dgen | MGI:3604539 | T3745
Ccr6 | chemokine (C-C motif) receptor 6 | MGI:1333797 | Ccr6tm1Dgen | MGI:3604541 | T187
Ccr7 | chemokine (C-C motif) receptor 7 | MGI:103011 | Ccr7tm1Dgen | MGI:3604543 | T611
Ccrl1 | chemokine (C-C motif) receptor-like 1 | MGI:2181676 | Ccrl1tm1Dgen | MGI:3604505 | T1115
Ccrl2 | chemokine (C-C motif) receptor-like 2 | MGI:1920904 | Ccrl2tm1Dgen | MGI:3604544 | T339
Cd97 | CD97 antigen | MGI:1347095 | Cd97tm1Dgen | MGI:3604535 | T867
Celsr2 | cadherin EGF LAG seven-pass G-type receptor 2 | MGI:1858235 | Celsr2tm1Dgen | MGI:3604518 | T960
Cer1 | cerberus 1 homolog (Xenopus laevis) | MGI:1201414 | Cer1tm1Dgen | MGI:3604536 | T67
Chrna2 | cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) | MGI:87886 | Chrna2tm1Dgen | MGI:3604548 | T1658
Chst3 | carbohydrate (chondroitin 6/keratan) sulfotransferase 3 | MGI:1858224 | Chst3tm1Dgen | MGI:3604509 | T1585
Clca5 | chloride channel calcium activated 5 | MGI:2139758 | Clca5tm1Dgen | MGI:3604504 | T401
Cnr2 | cannabinoid receptor 2 (macrophage) | MGI:104650 | Cnr2tm1Dgen | MGI:3604531 | T614
Ctsc | cathepsin C | MGI:109553 | Ctsctm1Dgen | MGI:3604533 | T717
Cxcr3 | chemokine (C-X-C motif) receptor 3 | MGI:1277207 | Cxcr3tm1Dgen | MGI:3604545 | T1043
Drd5 | dopamine receptor 5 | MGI:94927 | Drd5tm1Dgen | MGI:3604549 | T679
Edg6 | endothelial differentiation, G-protein-coupled receptor 6 | MGI:1333809 | Edg6tm1Dgen | MGI:3604550 | T302
Efemp2 | epidermal growth factor-containing fibulin-like extracellular matrix protein 2 | MGI:1891209 | Efemp2tm1Dgen | MGI:3604551 | T194
Esrra | estrogen related receptor, alpha | MGI:1346831 | Esrratm1Dgen | MGI:3604552 | T1888
Esrrg | estrogen-related receptor gamma | MGI:1347056 | Esrrgtm1Dgen | MGI:3604501 | T131
Faim2 | Fas apoptotic inhibitory molecule 2 | MGI:1919643 | Faim2tm1Dgen | MGI:3604553 | T1018
Frzb | frizzled-related protein | MGI:892032 | Frzbtm1Dgen | MGI:3604496 | T1471
Fzd1 | frizzled homolog 1 (Drosophila) | MGI:1196625 | Fzd1tm1Dgen | MGI:3604554 | T670
Fzd10 | frizzled homolog 10 (Drosophila) | MGI:2136761 | Fzd10tm1Dgen | MGI:3604499 | T1468
Fzd6 | frizzled homolog 6 (Drosophila) | MGI:108474 | Fzd6tm1Dgen | MGI:3604497 | T669
Fzd8 | frizzled homolog 8 (Drosophila) | MGI:108460 | Fzd8tm1Dgen | MGI:3604555 | T671
Gabbr1 | gamma-aminobutyric acid (GABA-B) receptor, 1 | MGI:1860139 | Gabbr1tm1Dgen | MGI:3604487 | T1042
Gabra3 | gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 | MGI:95615 | Gabra3tm1Dgen | MGI:3604586 | T936
Gabra4 | gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 4 | MGI:95616 | Gabra4tm1Dgen | MGI:3604588 | T899
Gabrp | gamma-aminobutyric acid (GABA-A) receptor, pi | MGI:2387597 | Gabrptm1Dgen | MGI:3604585 | T1632
Gabrq | gamma-aminobutyric acid (GABA-A) receptor, subunit theta | MGI:1888498 | Gabrqtm1Dgen | MGI:3604492 | T1631
Galr1 | galanin receptor 1 | MGI:1096364 | Galr1tm1Dgen | MGI:3604584 | T647
Glra3 | glycine receptor, alpha 3 subunit | MGI:95749 | Glra3tm1Dgen | MGI:3604595 | T1635
Gpr151 | G protein-coupled receptor 151 | MGI:2441887 | Gpr151tm1Dgen | MGI:3604578 | T3348
Gpr19 | G protein-coupled receptor 19 | MGI:892973 | Gpr19tm1Dgen | MGI:3604494 | T174
Gpr3 | G-protein coupled receptor 3 | MGI:101908 | Gpr3tm1Dgen | MGI:3604483 | T342
Gpr37 | G protein-coupled receptor 37 | MGI:1313297 | Gpr37tm1Dgen | MGI:3604579 | T334
Gpr6 | G protein-coupled receptor 6 | MGI:2155249 | Gpr6tm1Dgen | MGI:3604582 | T356
Gprk5 | G protein-coupled receptor kinase 5 | MGI:109161 | Gprk5tm1Dgen | MGI:3604583 | T1767
Gria3 | glutamate receptor, ionotropic, AMPA3 (alpha 3) | MGI:95810 | Gria3tm1Dgen | MGI:3604486 | T1623
Gria4 | glutamate receptor, ionotropic, AMPA4 (alpha 4) | MGI:95811 | Gria4tm1Dgen | MGI:3604485 | T1624
Grik5 | glutamate receptor, ionotropic, kainate 5 (gamma 2) | MGI:95818 | Grik5tm1Dgen | MGI:3604589 | T898
Grm1 | glutamate receptor, metabotropic 1 | MGI:1351338 | Grm1tm1Dgen | MGI:3604591 | T801
Grm3 | glutamate receptor, metabotropic 3 | MGI:1351340 | Grm3tm1Dgen | MGI:3604593 | T796
Grm7 | glutamate receptor, metabotropic 7 | MGI:1351344 | Grm7tm1Dgen | MGI:3604484 | T799
Gsk3b | glycogen synthase kinase 3 beta | MGI:1861437 | Gsk3btm1Dgen | MGI:3604596 | T3228
Hcrtr1 | hypocretin (orexin) receptor 1 | MGI:2385650 | Hcrtr1tm1Dgen | MGI:3604598 | T2093
Htr1f | 5-hydroxytryptamine (serotonin) receptor 1F | MGI:99842 | Htr1ftm1Dgen | MGI:3604523 | T597
Htr2b | 5-hydroxytryptamine (serotonin) receptor 2B | MGI:109323 | Htr2btm1Dgen | MGI:3604521 | T599
Htr4 | 5 hydroxytryptamine (serotonin) receptor 4 | MGI:109246 | Htr4tm1Dgen | MGI:3604474 | T600
Htr5a | 5-hydroxytryptamine (serotonin) receptor 5A | MGI:96283 | Htr5atm1Dgen | MGI:3604475 | T619
Htr7 | 5-hydroxytryptamine (serotonin) receptor 7 | MGI:99841 | Htr7tm1Dgen | MGI:3604477 | T602
Il8ra | interleukin 8 receptor, alpha | MGI:2448715 | Il8ratm1Dgen | MGI:3604601 | T807
Insl5 | insulin-like 5 | MGI:1346085 | Insl5tm1Dgen | MGI:3604599 | T65
Kcnh5 | potassium voltage-gated channel, subfamily H (eag-related), member 5 | MGI:3584508 | Kcnh5tm1Dgen | MGI:3604469 | T1654
Kcnq2 | potassium voltage-gated channel, subfamily Q, member 2 | MGI:1309503 | Kcnq2tm1Dgen | MGI:3604594 | T1112
Lats2 | large tumor suppressor 2 | MGI:1354386 | Lats2tm1Dgen | MGI:3604602 | T527
Lmbr1 | limb region 1 | MGI:1861746 | Lmbr1tm1Dgen | MGI:3604603 | T3777
Lmbr1l | limb region 1 like | MGI:1289247 | Lmbr1ltm1Dgen | MGI:3604480 | T2820
Lrp5 | low density lipoprotein receptor-related protein 5 | MGI:1278315 | Lrp5tm1Dgen | MGI:3604604 | T193
Mapkapk2 | MAP kinase-activated protein kinase 2 | MGI:109298 | Mapkapk2tm1Dgen | MGI:3604570 | T3255
Mmp16 | matrix metallopeptidase 16 | MGI:1276107 | Mmp16tm1Dgen | MGI:3604479 | T1241
Mmp17 | matrix metallopeptidase 17 | MGI:1346076 | Mmp17tm1Dgen | MGI:3604575 | T1242
Mtmr1 | myotubularin related protein 1 | MGI:1858271 | Mtmr1tm1Dgen | MGI:3604577 | T1973
Mtmr2 | myotubularin related protein 2 | MGI:1924366 | Mtmr2tm1Dgen | MGI:3604478 | T1970
Ntsr1 | neurotensin receptor 1 | MGI:97386 | Ntsr1tm1Dgen | MGI:3604581 | T641
Oprd1 | opioid receptor, delta 1 | MGI:97438 | Oprd1tm1Dgen | MGI:3604473 | T678
Oprl1 | opioid receptor-like 1 | MGI:97440 | Oprl1tm1Dgen | MGI:3604471 | T651
Pde1b | phosphodiesterase 1B, Ca2+-calmodulin dependent | MGI:97523 | Pde1btm1Dgen | MGI:3604470 | T1166
Pkd2l2 | polycystic kidney disease 2-like 2 | MGI:1858231 | Pkd2l2tm1Dgen | MGI:3604592 | T325
Ppard | peroxisome proliferator activator receptor delta | MGI:101884 | Ppardtm1Dgen | MGI:3604590 | T683
Ppm1f | protein phosphatase 1F (PP2C domain containing) | MGI:1918464 | Ppm1ftm1Dgen | MGI:3604597 | T2107
Ppm1g | protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform | MGI:106065 | Ppm1gtm1Dgen | MGI:3604466 | T753
Prss12 | protease, serine, 12 neurotrypsin (motopsin) | MGI:1100881 | Prss12tm1Dgen | MGI:3604467 | T1715
Ptch2 | patched homolog 2 | MGI:1095405 | Ptch2tm1Dgen | MGI:3604587 | T1673
Ptger1 | prostaglandin E receptor 1 (subtype EP1) | MGI:97793 | Ptger1tm1Dgen | MGI:3604468 | T593
Ptpro | protein tyrosine phosphatase, receptor type, O | MGI:1097152 | Ptprotm1Dgen | MGI:3604600 | T731
Rgs2 | regulator of G-protein signaling 2 | MGI:1098271 | Rgs2tm1Dgen | MGI:3604465 | T460
Rgs4 | regulator of G-protein signaling 4 | MGI:108409 | Rgs4tm1Dgen | MGI:3604580 | T462
Rgs5 | regulator of G-protein signaling 5 | MGI:1098434 | Rgs5tm1Dgen | MGI:3604464 | T459
Scn11a | sodium channel, voltage-gated, type XI, alpha | MGI:1345149 | Scn11atm1Dgen | MGI:3604572 | T1119
Scn9a | sodium channel, voltage-gated, type IX, alpha | MGI:107636 | Scn9atm1Dgen | MGI:3604573 | T1217
Sema5a | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | MGI:107556 | Sema5atm1Dgen | MGI:3604576 | T2007
Sema6c | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C | MGI:1338032 | Sema6ctm1Dgen | MGI:3604574 | T2165
Slc22a12 | solute carrier family 22 (organic anion/cation transporter), member 12 | MGI:1195269 | Slc22a12tm1Dgen | MGI:3604569 | T1486
Slc22a6 | solute carrier family 22 (organic anion transporter), member 6 | MGI:892001 | Slc22a6tm1Dgen | MGI:3604571 | T1494
Slc40a1 | solute carrier family 40 (iron-regulated transporter), member 1 | MGI:1315204 | Slc40a1tm1Dgen | MGI:3604568 | T1841
Slc6a11 | solute carrier family 6 (neurotransmitter transporter, GABA), member 11 | MGI:95630 | Slc6a11tm1Dgen | MGI:3604491 | T1380
Slc6a9 | solute carrier family 6 (neurotransmitter transporter, glycine), member 9 | MGI:95760 | Slc6a9tm1Dgen | MGI:3604567 | T1381
Slc7a8 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 | MGI:1355323 | Slc7a8tm1Dgen | MGI:3604565 | T1783
Slc9a6 | solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 | MGI:2443511 | Slc9a6tm1Dgen | MGI:3604561 | T1688
Sstr1 | somatostatin receptor 1 | MGI:98327 | Sstr1tm1Dgen | MGI:3604559 | T623
Tgfbr1 | transforming growth factor, beta receptor I | MGI:98728 | Tgfbr1tm1Dgen | MGI:3604556 | T1444
Thbs4 | thrombospondin 4 | MGI:1101779 | Thbs4tm1Dgen | MGI:3604558 | T2006
Tlr2 | toll-like receptor 2 | MGI:1346060 | Tlr2tm1Dgen | MGI:3604557 | T315
Tmprss11a | transmembrane protease, serine 11a | MGI:2684853 | Tmprss11atm1Dgen | MGI:3604454 | T54
Tpp1 | tripeptidyl peptidase I | MGI:1336194 | Tpp1tm1Dgen | MGI:3604537 | T1406
Trpm5 | transient receptor potential cation channel, subfamily M, member 5 | MGI:1861718 | Trpm5tm1Dgen | MGI:3604455 | T1178
Twsg1 | twisted gastrulation homolog 1 (Drosophila) | MGI:2137520 | Twsg1tm1Dgen | MGI:3604453 | T268
Uchl1 | ubiquitin carboxy-terminal hydrolase L1 | MGI:103149 | Uchl1tm1Dgen | MGI:3604452 | T1320
Xcr1 | chemokine (C motif) receptor 1 | MGI:1346338 | Xcr1tm1Dgen | MGI:3604538 | T355