Compare GO annotations for ORTHOMCL2298 PPOD cluster

Possible outliers might be spotted in a summary/comparison table of high level GO categories.
Complete table of the annotations represented in this image is provided below.

Annotations are indicated by colored nodes: human, mouse, rat, chicken, zfish, fly, worm, dicty, dicot, yeast, pombe, ecoli.
Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Red arrows indicate "regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Chicken from GOA; Zfish from Zfin; Fly from Flybase; Worm from Wormbase; Dicot from TAIR; Dicty from Dictybase; Yeast from SGD; Pombe from Sanger; Ecoli from EcoliHub.
Organisms with experimental annotations are indicated: EXP, IC, IDA, IEP, IGI, IMP, IPI. In addition, ISS (ISA, ISM, ISO) annotations are so indicated.
Does not include evidence codes: IEA, IGC, NAS, ND, NR, RCA, TAS.
Graph is also available as SVG (requires viewer plug-in from Adobe)
Evidence codes are listed at the bottom of the page.
Graph generated Mon Mar 30 18:25:07 2009.

Compare annotations to GO categories for ORTHOMCL2298.

Entry indicates that ortholog exists for this gene.
Colored entries indicate experimental annotation.
Parentheses indicate ISS annotation only.

Category	ID	Term	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Molecular Function	GO:0005488	binding	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Molecular Function	GO:0003824	catalytic activity	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Molecular Function	GO:0005198	structural molecule activity	Human	Mouse	Rat	Chicken	Zfish	(Fly)	Worm	(Dicty)	Dicot	Yeast	(Pombe)	Ecoli
Cellular Component	GO:0005623	cell	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Cellular Component	GO:0044464	cell part	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Cellular Component	GO:0032991	macromolecular complex	Human	Mouse	Rat	Chicken	Zfish	(Fly)	Worm	Dicty	Dicot	Yeast	(Pombe)	Ecoli
Cellular Component	GO:0031974	membrane-enclosed lumen	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Cellular Component	GO:0043226	organelle	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	(Pombe)	Ecoli
Cellular Component	GO:0044422	organelle part	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	(Pombe)	Ecoli
Biological Process	GO:0065007	biological regulation	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0009987	cellular process	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	(Pombe)	Ecoli
Biological Process	GO:0032502	developmental process	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0051234	establishment of localization	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0040007	growth	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0051179	localization	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0008152	metabolic process	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	(Pombe)	Ecoli
Biological Process	GO:0032501	multicellular organismal process	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0048519	negative regulation of biological process	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0048518	positive regulation of biological process	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0050789	regulation of biological process	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0000003	reproduction	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Biological Process	GO:0050896	response to stimulus	Human	Mouse	(Rat)	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli

Full set of experimental (and ISS) annotations for ORTHOMCL2298

Category	ID	Term	DB Object	Evidence	With_From	Organism	Reference
Molecular Function	GO:0003684	damaged DNA binding	P23396	IDA		Human	PMID:16737853
Molecular Function	GO:0003684	damaged DNA binding	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	P23396	IDA		Human	PMID:16737853
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	RpS3	IDA		Fly	FB:FBrf0076708\|PMID:7929231
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	RpS3	IDA		Fly	FB:FBrf0087792\|PMID:8641296
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	RPS3	IDA		Yeast	SGD_REF:S000069743\|PMID:11561734
Molecular Function	GO:0004519	endonuclease activity	P23396	IMP		Human	PMID:16584637
Molecular Function	GO:0004519	endonuclease activity	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0003729	mRNA binding	P23396	IDA		Human	PMID:18464793
Molecular Function	GO:0003729	mRNA binding	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0051059	NF-kappaB binding	P23396	IPI	UniProtKB:Q04206	Human	PMID:18045535
Molecular Function	GO:0051059	NF-kappaB binding	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0008534	oxidized purine base lesion DNA N-glycosylase activity	RpS3	IDA		Fly	FB:FBrf0087792\|PMID:8641296
Molecular Function	GO:0005515	protein binding	P23396	IPI	UniProtKB:O15527	Human	PMID:15518571
Molecular Function	GO:0005515	protein binding	P23396	IPI	UniProtKB:P27695	Human	PMID:15518571
Molecular Function	GO:0005515	protein binding	P23396	IPI	UniProtKB:P15531	Human	PMID:16814409
Molecular Function	GO:0005515	protein binding	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0005515	protein binding	rps-3	IPI	UniProtKB:O02327	Worm	PMID:14704431
Molecular Function	GO:0005515	protein binding	rps3	IPI	dictyBase:DDB0001984	Dicty	dictyBase_REF:11031\|PMID:15653432
Molecular Function	GO:0005515	protein binding	rpsC	IPI	UniProtKB:P16528	Ecoli	PMID:16606699
Molecular Function	GO:0019901	protein kinase binding	P23396	IPI	UniProtKB:P27361	Human	PMID:15950189
Molecular Function	GO:0019901	protein kinase binding	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0003723	RNA binding	rps3	ISS	UniProt:P23396	Dicty	dictyBase_REF:10155
Molecular Function	GO:0003735	structural constituent of ribosome	P23396	IDA		Human	PMID:15883184
Molecular Function	GO:0003735	structural constituent of ribosome	Rps3	IC	GO:0022627	Rat	RGD:2299084\|PMID:12876473
Molecular Function	GO:0003735	structural constituent of ribosome	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Molecular Function	GO:0003735	structural constituent of ribosome	RpS3	ISS	UniProtKB:P17073	Fly	FB:FBrf0105495
Molecular Function	GO:0003735	structural constituent of ribosome	rps3	ISS	UniProt:P23396	Dicty	dictyBase_REF:10155
Molecular Function	GO:0003735	structural constituent of ribosome	RPS3	IDA		Yeast	SGD_REF:S000127723\|PMID:18782943
Molecular Function	GO:0003735	structural constituent of ribosome	rps3	ISS	SGD:S000005122	Pombe	PMID:17072883
Molecular Function	GO:0003735	structural constituent of ribosome	rpsC	IDA		Ecoli	PMID:4587209
Cellular Component	GO:0030686	90S preribosome	RPS3	IDA		Yeast	SGD_REF:S000086600\|PMID:12150911
Cellular Component	GO:0009507	chloroplast	AT2G31610.1	IDA		Dicot	TAIR:Publication:501712079\|PMID:15028209
Cellular Component	GO:0009507	chloroplast	AT2G31610.1	IDA		Dicot	TAIR:Publication:501724486\|PMID:18431481
Cellular Component	GO:0005737	cytoplasm	P23396	IDA		Human	PMID:14988002
Cellular Component	GO:0005737	cytoplasm	Rps3	IDA		Mouse	MGI:MGI:2450792\|PMID:12388085
Cellular Component	GO:0005737	cytoplasm	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Cellular Component	GO:0005737	cytoplasm	Rps3	ISO	RGD:736569	Rat	RGD:1624291
Cellular Component	GO:0005829	cytosol	P23396	EXP		Human	PMID:12588972
Cellular Component	GO:0005829	cytosol	P23396	IDA		Human	PMID:16814409
Cellular Component	GO:0005829	cytosol	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Cellular Component	GO:0005829	cytosol	rps3	IDA		Pombe	PMID:16823372
Cellular Component	GO:0022626	cytosolic ribosome	AT3G53870.1	IDA		Dicot	TAIR:Publication:501714926\|PMID:15734919
Cellular Component	GO:0022626	cytosolic ribosome	AT2G31610.1	IDA		Dicot	TAIR:Publication:501714975\|PMID:15821981
Cellular Component	GO:0022626	cytosolic ribosome	AT3G53870.1	IDA		Dicot	TAIR:Publication:501714975\|PMID:15821981
Cellular Component	GO:0022626	cytosolic ribosome	AT5G35530.1	IDA		Dicot	TAIR:Publication:501714975\|PMID:15821981
Cellular Component	GO:0022626	cytosolic ribosome	rpsC	IDA		Ecoli	PMID:4587209
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	P23396	IDA		Human	PMID:15883184
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	P23396	IDA		Human	PMID:8706699
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps3	IDA		Rat	RGD:2299084\|PMID:12876473
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps3	IDA		Rat	RGD:2300010\|PMID:947902
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps3	IDA		Rat	RGD:1599573\|PMID:2328735
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RpS3	ISS	UniProtKB:P17073	Fly	FB:FBrf0105495
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS3	IDA		Yeast	SGD_REF:S000116584\|PMID:3533916
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS3	IDA		Yeast	SGD_REF:S000127723\|PMID:18782943
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS3	IDA		Yeast	SGD_REF:S000127501\|PMID:385049
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	rps3	ISS	SGD:S000005122	Pombe	PMID:17072883
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	rpsC	IDA		Ecoli	PMID:4587209
Cellular Component	GO:0030425	dendrite	Rps3	IDA		Rat	RGD:2299084\|PMID:12876473
Cellular Component	GO:0012505	endomembrane system	Rps3	IDA		Rat	RGD:2299084\|PMID:12876473
Cellular Component	GO:0005811	lipid particle	RpS3	IDA		Fly	FB:FBrf0192764\|PMID:16979555
Cellular Component	GO:0016020	membrane	AT2G31610.1	IDA		Dicot	TAIR:Publication:501721401\|PMID:17432890
Cellular Component	GO:0016020	membrane	AT3G53870.1	IDA		Dicot	TAIR:Publication:501721401\|PMID:17432890
Cellular Component	GO:0016020	membrane	AT5G35530.1	IDA		Dicot	TAIR:Publication:501721401\|PMID:17432890
Cellular Component	GO:0016363	nuclear matrix	RpS3	IDA		Fly	FB:FBrf0076708\|PMID:7929231
Cellular Component	GO:0005730	nucleolus	AT5G35530.1	IDA		Dicot	TAIR:Publication:501714224\|PMID:15496452
Cellular Component	GO:0005634	nucleus	P23396	IDA		Human	PMID:18045535
Cellular Component	GO:0005634	nucleus	P23396	IDA		Human	PMID:14988002
Cellular Component	GO:0005634	nucleus	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Cellular Component	GO:0005634	nucleus	RpS3	IDA		Fly	FB:FBrf0076708\|PMID:7929231
Cellular Component	GO:0005886	plasma membrane	AT2G31610.1	IDA		Dicot	TAIR:Publication:501720626\|PMID:17151019
Cellular Component	GO:0030688	preribosome, small subunit precursor	RPS3	IDA		Yeast	SGD_REF:S000116235\|PMID:16738661
Cellular Component	GO:0032587	ruffle membrane	P23396	IDA		Human	PMID:16814409
Cellular Component	GO:0032587	ruffle membrane	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Cellular Component	GO:0005773	vacuole	AT2G31610.1	IDA		Dicot	TAIR:Publication:501714874\|PMID:15539469
Biological Process	GO:0006919	activation of caspase activity	P23396	IDA		Human	PMID:14988002
Biological Process	GO:0006919	activation of caspase activity	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Biological Process	GO:0008340	determination of adult life span	rps-3	IMP	WB:WBRNAi00066262\|WB:WBPhenotype:0000039	Worm	WB:WBPaper00029254\|PMID:17411345
Biological Process	GO:0006281	DNA repair	RpS3	IGI	EchoBASE:EB0325	Fly	FB:FBrf0087792\|PMID:8641296
Biological Process	GO:0006281	DNA repair	RpS3	IGI	EchoBASE:EB1066\|EchoBASE:EB0645	Fly	FB:FBrf0087792\|PMID:8641296
Biological Process	GO:0009790	embryonic development	rps3	IMP	ZFIN:ZDB-MRPHLNO-070326-1	Zfish	ZFIN:ZDB-PUB-061229-22\|PMID:17183665
Biological Process	GO:0009792	embryonic development ending in birth or egg hatching	rps-3	IMP	WB:WBRNAi00002450\|WB:WBPhenotype:0000050	Worm	WB:WBPaper00004403\|PMID:11099034
Biological Process	GO:0009792	embryonic development ending in birth or egg hatching	rps-3	IMP	WB:WBRNAi00002803\|WB:WBPhenotype:0000050	Worm	WB:WBPaper00004403\|PMID:11099034
Biological Process	GO:0009792	embryonic development ending in birth or egg hatching	rps-3	IMP	WB:WBRNAi00041007\|WB:WBPhenotype:0000050	Worm	WB:WBPaper00025054\|PMID:15791247
Biological Process	GO:0009792	embryonic development ending in birth or egg hatching	rps-3	IMP	WB:WBRNAi00041008\|WB:WBPhenotype:0000050	Worm	WB:WBPaper00025054\|PMID:15791247
Biological Process	GO:0040007	growth	rps-3	IMP	WB:WBRNAi00066262\|WB:WBPhenotype:0000059	Worm	WB:WBPaper00029254\|PMID:17411345
Biological Process	GO:0006917	induction of apoptosis	P23396	IDA		Human	PMID:14988002
Biological Process	GO:0006917	induction of apoptosis	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Biological Process	GO:0018996	molting cycle, collagen and cuticulin-based cuticle	rps-3	IMP	WB:WBRNAi00066859\|WB:WBPhenotype:0000638	Worm	WB:WBPaper00026763\|PMID:16122351
Biological Process	GO:0045738	negative regulation of DNA repair	P23396	IMP		Human	PMID:17049931
Biological Process	GO:0045738	negative regulation of DNA repair	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Biological Process	GO:0043524	negative regulation of neuron apoptosis	RpS3	IMP		Fly	FB:FBrf0190282\|PMID:16291791
Biological Process	GO:0032088	negative regulation of NF-kappaB transcription factor activity	P23396	IMP		Human	PMID:18045535
Biological Process	GO:0032088	negative regulation of NF-kappaB transcription factor activity	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Biological Process	GO:0002119	nematode larval development	rps-3	IMP	WB:WBRNAi00033268\|WB:WBPhenotype:0000054	Worm	WB:WBPaper00024497\|PMID:15489339
Biological Process	GO:0002119	nematode larval development	rps-3	IMP	WB:WBRNAi00066262\|WB:WBPhenotype:0000059	Worm	WB:WBPaper00029254\|PMID:17411345
Biological Process	GO:0000003	reproduction	rps-3	IMP	WB:WBRNAi00008425\|WB:WBPhenotype:0000689	Worm	WB:WBPaper00005654\|PMID:12529635
Biological Process	GO:0000003	reproduction	rps-3	IMP	WB:WBRNAi00024597\|WB:WBPhenotype:0000689	Worm	WB:WBPaper00006395\|PMID:14551910
Biological Process	GO:0006974	response to DNA damage stimulus	P23396	IEP		Human	PMID:17560175
Biological Process	GO:0006974	response to DNA damage stimulus	Rps3	ISO	RGD:736568	Rat	RGD:1624291
Biological Process	GO:0009651	response to salt stress	AT2G31610.1	IEP		Dicot	TAIR:Publication:501723430\|PMID:17916636
Biological Process	GO:0009651	response to salt stress	AT3G53870.1	IEP		Dicot	TAIR:Publication:501723430\|PMID:17916636
Biological Process	GO:0009651	response to salt stress	AT5G35530.1	IEP		Dicot	TAIR:Publication:501723430\|PMID:17916636
Biological Process	GO:0006407	rRNA export from nucleus	RPS3	IMP		Yeast	SGD_REF:S000087225\|PMID:16246728
Biological Process	GO:0006412	translation	Rps3	IC	GO:0012505	Rat	RGD:2299084\|PMID:12876473
Biological Process	GO:0006412	translation	RpS3	ISS	UniProtKB:P17073	Fly	FB:FBrf0105495
Biological Process	GO:0006412	translation	RPS3	IC	GO:0022627	Yeast	SGD_REF:S000127723\|PMID:18782943
Biological Process	GO:0006412	translation	RPS3	IC	GO:0022627	Yeast	SGD_REF:S000116584\|PMID:3533916
Biological Process	GO:0006412	translation	RPS3	IC	GO:0022627	Yeast	SGD_REF:S000127501\|PMID:385049
Biological Process	GO:0006412	translation	rps3	ISS	SGD:S000005122	Pombe	PMID:17072883
Biological Process	GO:0006412	translation	rpsC	IDA		Ecoli	PMID:4579428
Biological Process	GO:0006414	translational elongation	P23396	EXP		Human	PMID:15189156
Biological Process	GO:0006414	translational elongation	Rps3	ISO	RGD:736568	Rat	RGD:1624291

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IC Inferred by curator

IDA Inferred from direct assay

IEA Inferred from electronic annotation

IEP Inferred from expression pattern

IGC Inferred from genomic context

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

NAS Non-traceable Author Statement

ND No biological data available

RCA Reviewed computational analysis

TAS Traceable author statement

NR Not recorded (appears in some legacy annotations)