# Generated by SRI International Pathway Tools version 11.5 on Fri Dec 21, 2007
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#
#    Pathway Tools Init File
#    -----------------------
#    This file contains initialization parameters for Pathway Tools.
#    Each parameter needs to be specified on its own line, with the name
#    of the parameter followed by a separator consisting of one or more space characters,
#    which are followed by the value, which is usually a text string or an integer.
#
#    Lines beginning with the hash character "#" are ignored and are used for comments.
#    Therefore, when defining a value for a parameter whose line begins with "#",
#    please be sure to remove all hash characters from the line for that parameter
#    or it will remain inactive.
#
#    The parameters in this file can usually be overridden by supplying the
#    corresponding command-line flags to the pathway-tools startup script.
#
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#
#    Parameters for Pathway Tools when running in WWW server mode
#      -- Setting these parameters is MANDATORY if you run Pathway Tools in
#         WWW server mode.

# Hostname of the machine on which Pathway Tools is running,
# which Pathway Tools will insert in URLs within the WWW pages
# that it generates.
#
WWW-Server-Hostname mousecyc.jax.org

# Port number on which Pathway Tools should listen for WWW server
# requests, and which Pathway Tools will insert in URLs within the
# WWW pages that it generates.  The standard port for WWW servers is 80,
# but this may require root privileges for starting up Pathway Tools.
#
WWW-Server-Port 80

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#
#    Additional Parameters for Pathway Tools when running in WWW server mode
#      -- Setting these parameters is OPTIONAL if you run Pathway Tools in
#         WWW server mode.

# If you wish the users of your website to send technical-support email
# to you instead of to the makers of BioCyc and Pathway Tools, please
# specify your support email address, and it will be inserted into your
# website.
#
Support-Email-Address mdolan@informatics.jax.org

# Specify which organisms should be published by the WWW server.
# This parameter assists users in complying with the SRI license
# provision that disallows users from publishing the MetaCyc PGDB
# on their externally visible WWW site.  However, users may publish
# all PGDBs on a site only visible from within their institution.
# Possible values are public, all, or a list of organism IDs delimited by +'s.
# Example of the latter: ECOLI+META+VCHO
#
WWW-Publish MOUSE+HUMAN

# Needed only for a Proxy WWW Server setup.
# Port number on which another WWW server, such as Apache, will listen
# for requests to forward them to the Pathway Tools WWW server.
# When using this parameter, the other WWW server needs to be configured
# to actually forward the requests.
#
###WWW-Server-Proxy-Port 80

# If a WWW-Server-Port smaller than 1024 is specified, on UNIX, the root user
# needs to start the Pathway Tools, and after the WWW server starts listening,
# it will switch to the user account indicated here, to reduce security risks.
#
###WWW-Server-User biocyc

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#
#    Parameters used by Pathway Tools when accessing PGDBs within a MySQL
#    or Oracle server.
#      -- Setting these parameters is MANDATORY if you want to access PGDBs
#         from a MySQL or Oracle server.

# Hostname of the machine on which the MySQL or Oracle server is running.
#
###RDBMS-Server-Hostname 

# Port number on which either the MySQL or Oracle server is listening.
# MySQL standard is 3306; Oracle standard is 1521
#
###RDBMS-Server-Port 3306

# Name of database within the MySQL or Oracle server in which PGDBs
# should be stored.
#
###RDBMS-Database-Name 

# Username used to log in to the MySQL or Oracle server.
# If set to the value PROMPT, then the user will be prompted 
# for their username and password.
#
###RDBMS-Username 

# Password used to log into the MySQL or Oracle server.
#
###RDBMS-Password