H2 haplotypes

Major Histocompatibility Complex H2 Haplotypes

Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory

Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory

Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains.

Table 4 Allelic Designations for H2 Congenic Strains

Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory

Strain	Haplotype
129P1/ReJ	b
129P3/J	b
129P3/JEms	b
129P4/RrRk	b
129S1/SvImJ	b
129T2/SvEmsJ	b
129X1/SvJ	b
A/HeJ	a
A/J	a
A/WySnJ	a
AKR/Cum	k
AKR/J	k
AKR/LtJ	g^x
ALS/LtJ	nb1
AU/SsJ	q
BALB/cAnLil	d
BALB/cBiDsm	d
BALB/cByJ	d
BALB/cGa	d
BALB/cGrRk	d
BALB/cJ	d
BALB/cWtEi	d
BDP/J	p
BPH/2@J	?
BPL/1@J	?
BPN/3@J	?
BRVR/WrDv	k
BTBR T⁺ tf/tf	b
BUB/BnJ	q
C3H/HeJ	k
C3H/HeJSx	k
C3H/HeOuJ	k
C3H/HeSnJ	k
C3HeB/FeJ	k
C3HfB/Bi	k
C57BL/6BvJ	b
C57BL/6J	b
C57BL/6JEi	b
C57BL/10J	b
C57BL/10ScSn	b
C57BL/10SnJ	b
C57BL/10Sx	b
C57BL/10WtRk	b
C57BLKS/J	d
C57BR/cdJ	k
C57L/J	b
C58/J	k
CBA/CaGnLe	k
CBA/CaH-T6/J	k
CBA/CaHN-Btk^xid/J	k
CBA/CaJ	k
CBA/J	k
CE/J	k
DA/HuSn	qp
DBA/1J	q
DBA/1LacJ	q
DBA/2Bi	d
DBA/2DeJ	d
DBA/2HaSmn	d
DBA/2J	d
DDY/Jcl	s
DW/J	b
EL/Suz	b
FL/1Re	k
FL/4Re	k
FVB/NJ	q
HRS/J	k
HTG/GoSfSn	g
I/LnJ	j
KK/HlJ	b
LDH2/Ei	b
LG/J	d
LP/J	b
MA/MyJ	k
MRL/MpJ	k
NH/KiPt	k
NOD/LtJ	g⁷
NON/LtJ	nb1
NOR/LtJ	g⁷
NU/J	q
NZB/BlNJ	d
NZM2328/J	z
NZM2410/J	z
NZO/HlJ	z
NZW/LacJ	z
P/J	p
PL/J	u
PRO/Re	b
RBF/DnJ	?
RF/J	k
RIII/DmMob	r
RIIIS/J	r
SB/Le	b
SEA/GnJ	d
SEC/1ReJ	d
SENCARB/PtJ	q
SENCARC/PtJ	q
SI/Col	d
SIM/Ut	?
SJL/Bm	s
SJL/J	s
SM/J	v
SOD1/Ei	k
ST/bJ	k
SWR/Bm	q
SWR/J	q
YBR/Ei	d

? Unknown

Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory

Strain	Haplotype
AKXD-1/Ty	k
AKXD-2/Ty	d
AKXD-3/Ty	k
AKXD-6/Ty	k
AKXD-9/Ty	d
AKXD-10/Ty	k
AKXD-13/Ty	d
AKXD-14/Ty	d
AKXD-15/Ty	k
AKXD-16/Ty	d
AKXD-20/Ty	d
AKXD-21/Ty	k
AKXD-22/Ty	d
AKXD-23/Ty	d
AKXD-24/Ty	d
AKXD-27/Ty	k
AKXD-28/Ty	k
AKXL-6/Ty	k
AKXL-17A/Ty	b
AKXL-29/Ty	b
AKXL-38A/Ty	?
AXB-1/Pgn	a
AXB-2/Pgn	a
AXB-4/Pgn	b
AXB-5/Pgn	a
AXB-6/Pgn	b
AXB-8/Pgn	a
AXB-10/Pgn	b
AXB-12/Pgn	a
AXB-13/Pgn	b
AXB-15/Pgn	a
AXB-18/Pgn	b
AXB-19/Pgn	b
AXB-20/Pgn	b
AXB-23/Pgn	b
AXB-24/Pgn	a
BRX58N-7/Ty	?
BXA-1/Pgn	b
BXA-2/Pgn	b
BXA-4/Pgn	a
BXA-7/Pgn	b
BXA-8/Pgn	a
BXA-11/Pgn	b
BXA-12/Pgn	a
BXA-13/Pgn	b
BXA-14/Pgn	b
BXA-16/Pgn	b
BXA-17/Pgn	a
BXA-24/Pgn	b
BXA-25/Pgn	a
BXA-26/Pgn	a
BXD-1/Ty	d
BXD-2/Ty	b
BXD-5/Ty	d
BXD-6/Ty	d
BXD-8/Ty	b
BXD-9/Ty	d
BXD-11/Ty	d
BXD-12/Ty	d
BXD-13/Ty	b
BXD-14/Ty	b
BXD-15/Ty	b
BXD-16/Ty	d
BXD-18/Ty	d
BXD-19/Ty	b
BXD-20/Ty	b
BXD-21/Ty	d
BXD-22/Ty	d
BXD-23/Ty	b
BXD-24/Ty	d
BXD-25/Ty	d
BXD-27/Ty	d
BXD-28/Ty	d
BXD-29/Ty	b
BXD-30/Ty	d
BXD-31/Ty	d
BXD-32/Ty	d
BXD-33/Ty	?
BXD-34/Ty	?
BXD-35/Ty	?
BXD-36/Ty	?
BXD-37/Ty	b
BXD-38/Ty	?
BXD-39/Ty	?
BXD-40/Ty	?
BXD-42/Ty	?
BXH-2/Ty	k
BXH-3/Ty	k
BXH-4/Ty	b
BXH-6/Ty	k
BXH-7/Ty	k
BXH-8/Ty	b
BXH-9/Ty	b
BXH-10/Ty	b
BXH-11/Ty	b
BXH-12/Ty	k
BXH-14/Ty	k
BXH-19/Ty	b
CX8-B/Ei	?
CX8-C/Ei	?
CX8-D/Ei	?
CX8-G/Ei	?
CX8-I1/Ei	?
CX8-I2/Ei	?
CX8-M/Ei	?
CX8-N/Ei	?
CXB-1/By	d
CXB-2/By	b
CXB-3/By	b
CXB-4/By	d
CXB-5/By	b
CXB-6/By	b
CXB-7/By	b
CXB-8/HiAJ	b
CXB-9/HiAJ	K^b D^d
CXB-10/HiAJ	b
CXB-11/HiAJ	b
CXB-12/HiAJ	d
CXB-13/HiAJ	b
CXJ-1/SlkJ	d
CXJ-3/SlkJ	d
CXJ-4/SlkJ	s
CXJ-6/SlkJ	s
CXJ-8/SlkJ	d
CXJ-9/SlkJ	d
CXJ-15/SlkJ	s
LTXBJ/Na	?
LTXBO/Sv	?
LXB-3/Ty	?
LXPL-2/Ty	?
NX129-10Ty	?
NX129-18Ty	?
NXSM-C/Ei	d
NXSM-D/Ei	d
NXSM-E/Ei	d
NXSM-F/Ei	?
NXSM-I/Ei	v
NXSM-L/Ei	v
NXSM-N/Ei	v
NXSM-P/Ei	d
NXSM-Q/Ei	v
NXSM-T1/Ei	v
NXSM-T2/Ei	d
NXSM-U/Ei	v
NXSM-W/Ei	d
NXSM-X/Ei	v
NXSM-Z/Ei	v
SWXJ-1/Bm	q
SWXJ-2/Bm	s
SWXJ-3/Bm	s
SWXJ-4/Bm	q
SWXJ-5/Bm	q
SWXJ-6/Bm	s
SWXJ-7/Bm	q
SWXJ-8/Bm	s
SWXJ-9/Bm	q
SWXJ-10/Bm	q
SWXJ-11/Bm	s
SWXJ-12/Bm	s
SWXJ-13/Bm	q
SWXJ-14/Bm	s
SWXL-4/Ty	b
SWXL-15/Ty	q
SWXL-16/Ty	b
SWXL-17/Ty	q

? Unknown

Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains.

H2 haplotype	K	Ab	Aa	Eb	Ea*	S	D	L	Qa-2	T18	Q1
	Class Ia	Class II				Class III	Class Ia		Class Ib
a	k	k	k	k	k	d	d	d	a	a	a
b	b	b	b	b	^	b	b	b**	a	b	b
d	d	d	d	d	d	d	d	d	a	c	b
f	f	f	f	f	f	f	f	f	b	d	b
j	j	j	j	j	j	j	b	b	a	b	b
k	k	k	k	k	k	k	k	k	b	b	b
g⁷	d	g⁷	d	d	d	d	b	^	a	b	b
g^x	d	g⁷	g⁷	^	^	?	dx	?	?	?	?
m	k	k	k	k	k	k	q	q	a	a	a
nb1	b	nb1	nb1	k	k	?	b	?	?	?	?
p	p	p	p	p	p	p	p	p	b	e	a
q	q	q	q	q	q	q	q	q	a	b	b
r	r	r	r	r	r	r	r	r	b	b	b
s	s	s	s	s	s	s	s	s	a	b	b
u	u	u	u	u	u	u	d	d	a	a	a
v	v	v	v	v	v	v	v	v	a	b	b
z	u	u	u	u	u	z	z	z	b	b	b

? unknown

^ null

* Additional strains that are Ea null: DBA/1J, DBA/1LacJ, SJL/J

** C57BL/6, C57BL/10 and substrains are null at L

Table 4 Allelic Designations for H2 Congenic Strains

Haplotype	Strain	K	Ab	Aa	Eb	Ea	S	D	L	Qa-2	T18	Q1
		Class Ia	Class II				Class III	Class Ia		Class Ib
a	B10.A-H2^a H2-T18^a/SgSnJ	k	k	k	k	k	d	d	d	a	a	a
ar1	B10.LG-H2^ar1	d	?	?	?	?	?	?	?	?	?	?
ar1	C3.LG-H2^ar1/CkcCy	d	?	?	?	?	?	?	?	?	?	?
as1	B10.S-H2(8R)	k	k	k	k/s	s	s	s	s	a	b	b
b	A.BY-H2^b H2-T18^b/SnJ	b	b	b	b	^	b	b	^	a	b	b
b	AKR.B6-H2^b	b	b	b	b	^	b	b	^	a	b	b
b	C3.SW-H2^b/SnJ	b	b	b	b	^	b	b	^	a	b	b
b	BKS.B6-H2^b	b	b	b	b	^	b	b	^	a	b	b
b	BRVR.B10-H2^b	b	b	b	b	^	b	b	^	a	b	b
b	C.B10-H2^b/LilMcdJ	b	b	b	b	^	b	b	^	a	b	b
b	D1.LP-H2^b H2-T18^b?/Sn	b	b	b	b	^	b	b	^	a	b	b
b	NOD.B10Sn-H2^b	b	b	b	b	^	b	b	^	a	b	b
bm1	B6.C-H2^bm1/By	bm1	b	b	b	b	b	b	^	a	b	b
bm1	B6.C-H2^bm1/ByJ	bm1	b	b	b	b	b	b	^	a	b	b
bm2	B6.C-H2^bm2/By	bm2	b	b	b	b	b	b	^	a	b	b
bm3	C57BL/6J-H2^bm3/Eg	bm3	b	b	b	b	b	b	^	a	b	b
bm4	B6.C-H2^bm4/By	bm4	b	b	b	b	b	b	^	a	b	b
bm5	C57BL/6Kh-H2^bm5/KhEg	bm5	b	b	b	b	b	b	^	a	b	b
bm7	B6.C-H2^bm7/KhEg	bm7	b	b	b	b	b	b	^	a	b	b
bm10	B6.C-H2^bm10/KhEg	bm10	b	b	b	b	b	b	^	a	b	b
bm11	B6.C-H2^bm11/KhEg	bm11	b	b	b	b	b	b	^	a	b	b
bm12	B6.C-H2^bm12/KhEg	b	bm12	b	b	b	b	b	^	a	b	b
bm14	B6.C-H2^bm14/By	b	b	b	b	b	b	bm14	^	a	b	b
bp5	B10.F-H2^bp5(14R)	b	b	b	b	b	p	p	p	b	?	?
bq1	B10.MBR-H2^bq1/SxEg	b	k	k	k	k	k	q	q	a	a	a
d	B10.D2-H2^d H2-T18^c Hc⁰/o2Sn	d	d	d	d	d	d	d	d	a	c	b
d	B10.D2-H2^d/n2Sn	d	d	d	d	d	d	d	d	a	d	b
d	B10.D2-H2^d H2-T18^c Hc⁰/oSnJ	d	d	d	d	d	d	d	d	a	c	b
d	B10.D2-H2^d H2-T18^c Hc¹/nSnJ	d	d	d	d	d	d	d	d	a	c	b
d	BRVR.D2-H2^d	d	d	d	d	d	d	d	d	a	d	b
d	B6.C-H2^d Mdmg1^c/aBy	d	d	d	d	d	d	d	d	a	d	b
d	D1.C-H2^d H2-T18^c/Sn	d	d	d	d	d	d	d	d	a	d	b
dm1	B10.D2-H2^dm1/Eg	d	d	d	d	d	d	dm1	dm1	?	?	?
dm2	BALB/c-H2^dm2/KhEg	d	d	d	d	d	d	d	d	b	c	b
f	B10.M-H2^f/nMob	f	f	f	f	f	f	f	f	b	d	b
f	B10.M-H2^f H2-T18^a?/Sn	f	f	f	f	f	f	f	f	b	d	b
f	A.CA-H2^f H2-T18^a/Sn	f	f	f	f	f	f	f	f	b	d	b
f	NON.NOD-H2^g7	d	g7	d	d	f	d	b	b	a	b	b
fm2	B10.M-H2^fm2/Mob	f	f	f	f	f	f	fm2	f	?	?	?
g	B10.HTG-H2^g/2Cy	d	d	d	d	d	d	b	^	a	b	b
g	C3.HTG-H2^g H2-T18^b?/Sn	d	d	d	d	d	d	b	^	a	b	b
g	C.HTG-H2^g/3Cy	d	d	d	d	d	d	b	^	a	b	b
g3	B10.D2-H2^g3(R103)/Eg	d	d	d	d	d	d	b	^	a	b	b
g6	B6.C-H2^g6	d	d	d	d	d	d	b	?	?	?	?
g7	B6.NOD - (D17Mit21-D17Mit10)	d	g7	d	d	d	d	b	^	a	b	b
g7	NON.NOD-H2^g7	d	g7	d	d	d	d	b	^	a	b	b
h2	B10.A-H2^h2(2R)/SgSnJ	k	k	k	k	k	d	b	^	a	b	b
h4	B10.A-H2^h4(4R)/SgDvEg	k	k	k	k/b	b	b	b	^	a	b	b
i3	B10.A-H2ⁱ³(3R)/SgDvEg	b	b	b	b/k	k	d	d	d	a	a	a
i5	B10.A-H2ⁱ⁵ H2-T18^a(5R)/SgSnJ	b	b	b	b/k	k	d	d	d	a	a	a
i7	B10.D2-H2ⁱ⁷(R107)/Eg	b	b	b	b	b	b	d	d	a	c	b
ia	B10.D2-H2^ia(R106)/Eg	b	b	b	b	b	b	dm1	dm1	a	c	b
j	B10.WB-H2^jH2-T18^b/Sn	j	j	j	j	j	j	b	b	a	b	b
j	C3.JK-H2^j H2-T18^b/Sn	j	j	j	j	j	j	b	b	a	b	b
k	B6.AKR-H2^k/FlaEg	k	k	k	k	k	k	k	k	b	b	b
k	B6.AKR-H2^k	k	k	k	k	k	k	k	k	b	b	b
k	C.C3-H2^k/LilMcdJ	k	k	k	k	k	k	k	k	b	b	b
k2	B10.BR-H2^k2 H2-T18^a/SgSnJ	k	k	k	k	k	k	k	k	b	a	a
kp1	B10.P-H2^kp1(10R)/Sg	k	p	p	p	p	p	p	p	b	?	?
m	B10.AKM-H2^m H2-T18^a/SnJ	k	k	k	k	k	k	q	q	a	a	a
nb1	NOD.NON-H2^nb1	b	nb1	nb1	k	k	?	b	?	?	?	?
o2	C3H-H2^o2 C4^b/SfSn	d	d	d	d	d	d	k	k	b	b	b
oz2	AKR.L-H2^oz2/Cy	b	?	?	?	?	?	k	?	?	?	?
p	C3.NB-H2^p H2-T18^c?/Sn	p	p	p	p	p	p	p	p	b	e	a
pa	B10.Y-H2^pa H2-T18^c/Sn	?	?	?	?	?	?	?	?	?	?	?
pb1	B10.F-H2^pb1(13R)	p	p	p	p	p	b	b	^	a	b	b
q	B10.D1-H2^q/SgJ	q	q	q	q	^	q	q	q	a	b	b
q	NOD.SWR-H2^q	q	q	q	q	^	q	q	q	a	b	b
qp1	B10.DA-H2^qp1 H2-T18^b (80NS)/Sn	q	q	q	q	q	q	s	s	a	b	b
qp1	D1.DA-H2^qp1/Sn	q	q	q	q	q	q	s	s	a	b	b
r	B10.RIII-H2^r(71NS)/nMob	r	r	r	r	r	r	r	r	b	b	b
r	B10.RIII-H2^r H2-T18^b (71NS)/Sn	r	r	r	r	r	r	r	r	b	b	b
r	LP.RIII-H2^r H2-T18^b/Sn	r	r	r	r	r	r	r	r	b	b	b
s	A.SW-H2^s H2-T18^b/SnJ	s	s	s	s	^	s	s	s	a	b	b
s	B10.S-H2^s/SgMcdJ	s	s	s	s	^	s	s	s	a	b	b
sm1	B10.S-H2^sm1 (12R)/Sg	s	s	s	s	s	s	s	?	?	?	?
t1	A.TL-H2^t1/SfDvEgMob	s	k	k	k	k	k	d	d	a	c	b
t2	A.TH-H2^t2/SfDvEgMob	s	s	s	s	s	s	d	d	a	a	a
t4	B10.S-H2^t4 (9R)	s	s	s	s/k	k	d	d	d	a	a	a
u	B20.PL-H2^u H2-T18^a (73NS)/Sn	u	u	u	u	u	u	d	d	a	a	a
v	B10.SM-H2^v H2-T18^b (70NS)/Sn cw	v	v	v	v	v	v	v	v	a	b	b
y1	B10.AQR-H2^y1/KljMcdJ	q	k	k	k	k	s	s	s	a	a	a
y2	B10.T-H2^y2 (6R)/SgDvEg	q	q	q	q	^	q	d	d	a	a	a

? unknown

^ null

Major Histocompatibility Complex H2 Haplotypes

Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains. Table 4 Allelic Designations for H2 Congenic Strains

Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory

Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory

Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains.

Table 4 Allelic Designations for H2 Congenic Strains