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Gene Expression Data
Assay Details
Assay
Reference: J:67768 Murakami Y, et al., Differential expression of plexin-a subfamily members in the mouse nervous system. Dev Dyn. 2001 Mar;220(3):246-58
Assay type: RNA in situ
MGI Accession ID: MGI:6431470
Gene symbol: Plxna1
Gene name: plexin A1
Probe: plexin-A1 cDNA1
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 2A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cochlear ganglion Strong 2A
TS24: organ of Corti Moderate 2A

Specimen 2B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: vestibular ganglion Strong 2B
TS24: semicircular canal Moderate Regionally restricted 2B Expressed in the ampullary crests.
TS24: labyrinth epithelium Moderate 2B
TS24: macula of utricle Moderate 2B

Specimen 3A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cochlear nucleus Strong Regionally restricted 3A Expressed in the dorsal and ventral cochlear nuclei which receive the cochlear nerve.
TS24: brainstem nucleus Weak Regionally restricted 3A Very weak expression in the vestibular nucleus.

Specimen 3C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: nucleus of trapezoid body Present 3C
TS24: brainstem nucleus Present Regionally restricted 3C Expressed in a region corresponding to the superior olivary complex, and the ventral and dorsal nuclei of the lateral lemniscus.

Specimen 3D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: inferior colliculus Present 3D Most prominent expression.
TS24: superior colliculus Weak 3D Very weak.

Specimen 3F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: geniculate thalamic group Present Regionally restricted 3F Expressed in the medial geniculate body which receives fibers from the inferior colliculus.

Specimen 4A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: nasal cavity respiratory epithelium Present 4A
TS24: olfactory epithelium Present 4A

Specimen 4D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: vomeronasal organ non-sensory epithelium Present 4D
TS24: vomeronasal organ sensory epithelium Present 4D

Specimen 4F: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: vomeronasal organ epithelium Present Regionally restricted 4F Increased expression compared with E16.5, and limited to the receptor layer.
TS27: vomeronasal organ non-sensory epithelium Present 4F
TS27: vomeronasal organ sensory epithelium Present 4F

Specimen 4H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: accessory olfactory bulb Strong Regionally restricted 4H Expressed strongly in the mitral and granule cell layers.
TS24: accessory olfactory bulb mitral cell layer Strong 4H
TS24: main olfactory bulb Moderate Diffuse 4H

Specimen 4I: postnatal day 3 (more )
Structure Level Pattern Image Note
TS27: accessory olfactory bulb Strong 4I
TS27: main olfactory bulb Weak 4I Markedly reduced expression.

Specimen 4L: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain nucleus Strong Regionally restricted 4L Expressed in the central nuclei of the accessory olfactory pathway including the posterior cortical amygdaloid nucleus and the medial amygdaloid nucleus, but not in the nuclei of the principal olfactory pathways.

Specimen 6A: postnatal day 3 (more )
Structure Level Pattern Image Note
TS27: hippocampus CA1 Strong 6A
TS27: hippocampus CA2 Strong 6A
TS27: hippocampus CA3 Strong 6A
TS27: dentate gyrus Trace 6A nearly absent

Specimen 6D: postnatal day 3 (more )
Structure Level Pattern Image Note
TS27: lateral septal complex Present 6D

Specimen 7A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: neural retina Present Regionally restricted 7A Expressed in the medial periphery where post-mitotic ganglion cells accumulate.

Specimen 7D: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: retina ganglion cell layer Strong 7D
TS28: retina inner nuclear layer Strong Regionally restricted 7D Expressed in the medial half which contains amacrine cells.

Specimen 8A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: trigeminal ganglion Moderate 8A

Specimen 8D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: dorsal root ganglion Present Regionally restricted 8D Limited to some neurons.

Specimen 8G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: sympathetic ganglion Trace 8G nearly negative

Specimen not shown: postnatal adult (more )
Structure Level Pattern Image Note
TS28: accessory olfactory bulb Absent
TS28: anterior olfactory nucleus Absent
TS28: auditory system Absent
TS28: entorhinal cortex Absent
TS28: lateral amygdaloid nucleus Absent
TS28: lateral septal complex Absent
TS28: main olfactory bulb Absent
TS28: medial mammillary nucleus Absent
TS28: piriform cortex Absent
TS28: hippocampus CA1 Weak
TS28: hippocampus CA2 Weak
TS28: hippocampus CA3 Weak

Specimen not shown: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: accessory olfactory bulb Strong
TS27: main olfactory bulb Weak Markedly reduced expression.
TS27: cortical amygdaloid nucleus Strong
TS27: medial amygdaloid nucleus Strong
TS27: anterior olfactory nucleus Absent
TS27: entorhinal cortex Absent
TS27: lateral amygdaloid nucleus Absent
TS27: piriform cortex Absent

Specimen not shown: postnatal day 3 (more )
Structure Level Pattern Image Note
TS27: cortical amygdaloid nucleus Present
TS27: medial amygdaloid nucleus Present
TS27: medial mammillary nucleus Present
TS27: presubiculum Present
TS27: subiculum Present
TS27: anterior olfactory nucleus Absent
TS27: entorhinal cortex Absent
TS27: lateral amygdaloid nucleus Absent
TS27: piriform cortex Absent

Specimen not shown: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: lateral geniculate nucleus Moderate


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/09/2024
MGI 6.23
The Jackson Laboratory