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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422558
Gene symbol: Foxe3
Gene name: forkhead box E3
Modification date: 06/12/2012
Probe: T55053
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH3069; Specimen C4175: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C4175_1_3C
TS22: central nervous system Strong Regionally restricted Embryo_C4175_1_3C
TS22: telencephalon Strong Regionally restricted Embryo_C4175_1_3C
TS22: cerebral cortex Strong Regionally restricted Embryo_C4175_1_3C
TS22: neocortex Strong Regionally restricted Embryo_C4175_1_3C
TS22: olfactory cortex Moderate Regionally restricted Embryo_C4175_1_6B
TS22: main olfactory bulb Absent
TS22: piriform cortex Moderate Regionally restricted Embryo_C4175_1_6B
TS22: hippocampus Strong Regionally restricted Embryo_C4175_1_3C
TS22: basal ganglia Strong Regionally restricted Embryo_C4175_1_5A
TS22: corpus striatum Moderate Regionally restricted Embryo_C4175_1_2B Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Moderate Regionally restricted Embryo_C4175_1_2B
TS22: telencephalon septum Strong Regionally restricted Embryo_C4175_1_5A
TS22: pallidum Strong Regionally restricted Embryo_C4175_1_5A Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Strong Regionally restricted Embryo_C4175_1_3D
TS22: pretectum Absent
TS22: superior colliculus Strong Regionally restricted Embryo_C4175_1_3D
TS22: inferior colliculus Strong Regionally restricted Embryo_C4175_1_3D
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C4175_1_3D
TS22: hindbrain Moderate Regionally restricted Embryo_C4175_1_4B
TS22: cerebellum Absent
TS22: pons Moderate Regionally restricted Embryo_C4175_1_4B
TS22: medulla oblongata Moderate Regionally restricted Embryo_C4175_1_4B
TS22: spinal cord Strong Regionally restricted Embryo_C4175_1_4C
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C4175_1_5C
TS22: cranial ganglion Moderate Regionally restricted Embryo_C4175_1_3A
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C4175_1_5C
TS22: eye Moderate Regionally restricted Embryo_C4175_1_1C
TS22: retina Moderate Regionally restricted Embryo_C4175_1_1C
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Absent
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Moderate Regionally restricted Embryo_C4175_1_3A Expression was detected in the digestive system.
TS22: intestine Absent
TS22: salivary gland Moderate Regionally restricted Embryo_C4175_1_3A
TS22: tongue Absent
TS22: tooth Absent
TS22: palatal shelf Absent
TS22: esophagus Absent
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Absent
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Absent
TS22: urinary system Absent Expression was not detected in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Absent
TS22: genital tubercle Absent
TS22: gonad Absent
TS22: gland Absent Expression was not detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C4175_1_3D
TS22: heart Weak Regionally restricted Embryo_C4175_1_3D
TS22: heart atrium Weak Regionally restricted Embryo_C4175_1_3D
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C4175_1_4D Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Regionally restricted Embryo_C4175_1_4D
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C4175_1_3D
TS22: forelimb Strong Regionally restricted Embryo_C4175_1_2A
TS22: hindlimb Strong Regionally restricted Embryo_C4175_1_2A
TS22: integumental system Strong Regionally restricted Embryo_C4175_1_2A
TS22: skin Strong Regionally restricted Embryo_C4175_1_2A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/14/2017
MGI 6.11
The Jackson Laboratory