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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826752
Gene symbol: Notch1
Gene name: notch 1
Probe: T35504
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008990_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_008990_01
TS23: retina Moderate Regionally restricted euxassay_008990_01
TS23: utricle Moderate Regionally restricted euxassay_008990_01

Specimen euxassay_008990_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_008990_02
TS23: retina Moderate Regionally restricted euxassay_008990_02
TS23: utricle Moderate Regionally restricted euxassay_008990_02

Specimen euxassay_008990_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_03
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_03
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_03
TS23: epidermis Strong Regionally restricted euxassay_008990_03
TS23: retina Moderate Regionally restricted euxassay_008990_03
TS23: utricle Moderate Regionally restricted euxassay_008990_03
TS23: left lung Moderate Regionally restricted euxassay_008990_03

Specimen euxassay_008990_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_04
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_04
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_04
TS23: epidermis Strong Regionally restricted euxassay_008990_04
TS23: retina Moderate Regionally restricted euxassay_008990_04
TS23: cornea Strong Regionally restricted euxassay_008990_04
TS23: utricle Moderate Regionally restricted euxassay_008990_04
TS23: left lung Moderate Regionally restricted euxassay_008990_04

Specimen euxassay_008990_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_05
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_05
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_05
TS23: vibrissa Strong Regionally restricted euxassay_008990_05
TS23: epidermis Strong Regionally restricted euxassay_008990_05
TS23: retina Moderate Regionally restricted euxassay_008990_05
TS23: cornea Moderate Regionally restricted euxassay_008990_05
TS23: utricle Moderate Regionally restricted euxassay_008990_05
TS23: left lung Moderate Regionally restricted euxassay_008990_05

Specimen euxassay_008990_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_06
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_06
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_06
TS23: vibrissa Strong Regionally restricted euxassay_008990_06
TS23: epidermis Strong Regionally restricted euxassay_008990_06
TS23: utricle Moderate Regionally restricted euxassay_008990_06
TS23: left lung Moderate Regionally restricted euxassay_008990_06

Specimen euxassay_008990_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_07
TS23: epidermis Strong Regionally restricted euxassay_008990_07
TS23: vibrissa Strong Regionally restricted euxassay_008990_07
TS23: utricle Moderate Regionally restricted euxassay_008990_07
TS23: cochlea Moderate Regionally restricted euxassay_008990_07
TS23: lower jaw molar Strong Regionally restricted euxassay_008990_07
TS23: upper jaw molar Strong Regionally restricted euxassay_008990_07
TS23: left lung Moderate Regionally restricted euxassay_008990_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_07

Specimen euxassay_008990_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_08
TS23: epidermis Strong Regionally restricted euxassay_008990_08
TS23: vibrissa Strong Regionally restricted euxassay_008990_08
TS23: cochlea Moderate Regionally restricted euxassay_008990_08
TS23: renal cortex Moderate Regionally restricted euxassay_008990_08
TS23: left lung Moderate Regionally restricted euxassay_008990_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_08

Specimen euxassay_008990_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_09
TS23: epidermis Strong Regionally restricted euxassay_008990_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008990_09
TS23: thymus primordium Strong Regionally restricted euxassay_008990_09
TS23: renal cortex Moderate Regionally restricted euxassay_008990_09
TS23: left lung Moderate Regionally restricted euxassay_008990_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_09

Specimen euxassay_008990_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_10
TS23: epidermis Strong Regionally restricted euxassay_008990_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008990_10
TS23: thymus primordium Strong Regionally restricted euxassay_008990_10
TS23: renal cortex Moderate Regionally restricted euxassay_008990_10
TS23: left lung Moderate Regionally restricted euxassay_008990_10

Specimen euxassay_008990_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_11
TS23: epidermis Strong Regionally restricted euxassay_008990_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_11
TS23: thymus primordium Strong Regionally restricted euxassay_008990_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_008990_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_008990_11
TS23: right lung Moderate Regionally restricted euxassay_008990_11

Specimen euxassay_008990_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_12
TS23: epidermis Strong Regionally restricted euxassay_008990_12
TS23: external naris epithelium Strong Regionally restricted euxassay_008990_12
TS23: anterior naris epithelium Strong Regionally restricted euxassay_008990_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_12
TS23: thymus primordium Strong Regionally restricted euxassay_008990_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_008990_12
TS23: right lung Moderate Regionally restricted euxassay_008990_12

Specimen euxassay_008990_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_13
TS23: epidermis Strong Regionally restricted euxassay_008990_13
TS23: anterior naris epithelium Strong Regionally restricted euxassay_008990_13
TS23: external naris epithelium Strong Regionally restricted euxassay_008990_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_13
TS23: vomeronasal organ Strong Regionally restricted euxassay_008990_13
TS23: thymus primordium Strong Regionally restricted euxassay_008990_13
TS23: right lung Moderate Regionally restricted euxassay_008990_13

Specimen euxassay_008990_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_14
TS23: epidermis Strong Regionally restricted euxassay_008990_14
TS23: thymus primordium Strong Regionally restricted euxassay_008990_14
TS23: right lung Moderate Regionally restricted euxassay_008990_14

Specimen euxassay_008990_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_15
TS23: epidermis Strong Regionally restricted euxassay_008990_15
TS23: vomeronasal organ Strong Regionally restricted euxassay_008990_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_15
TS23: anterior naris epithelium Strong Regionally restricted euxassay_008990_15
TS23: right lung Moderate Regionally restricted euxassay_008990_15
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_15

Specimen euxassay_008990_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_16
TS23: epidermis Strong Regionally restricted euxassay_008990_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_16
TS23: external naris epithelium Strong Regionally restricted euxassay_008990_16
TS23: cochlea Moderate Regionally restricted euxassay_008990_16
TS23: renal cortex Moderate Regionally restricted euxassay_008990_16
TS23: right lung Moderate Regionally restricted euxassay_008990_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_16

Specimen euxassay_008990_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_17
TS23: epidermis Strong Regionally restricted euxassay_008990_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_17
TS23: utricle Moderate Regionally restricted euxassay_008990_17
TS23: renal cortex Moderate Regionally restricted euxassay_008990_17
TS23: right lung Moderate Regionally restricted euxassay_008990_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_008990_17

Specimen euxassay_008990_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_18
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_18
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_18
TS23: epidermis Strong Regionally restricted euxassay_008990_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_008990_18
TS23: cochlea Moderate Regionally restricted euxassay_008990_18
TS23: utricle Moderate Regionally restricted euxassay_008990_18
TS23: renal cortex Moderate Regionally restricted euxassay_008990_18
TS23: right lung Moderate Regionally restricted euxassay_008990_18

Specimen euxassay_008990_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_19
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_19
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_19
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_008990_19
TS23: epidermis Strong Regionally restricted euxassay_008990_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008990_19
TS23: cochlea Moderate Regionally restricted euxassay_008990_19
TS23: utricle Moderate Regionally restricted euxassay_008990_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_008990_19
TS23: renal cortex Moderate Regionally restricted euxassay_008990_19
TS23: right lung Moderate Regionally restricted euxassay_008990_19

Specimen euxassay_008990_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_20
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_20
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_008990_20
TS23: skin Strong Regionally restricted euxassay_008990_20
TS23: epidermis Strong Regionally restricted euxassay_008990_20
TS23: vibrissa Strong Regionally restricted euxassay_008990_20
TS23: right lung Moderate Regionally restricted euxassay_008990_20

Specimen euxassay_008990_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_21
TS23: pons ventricular layer Strong Regionally restricted euxassay_008990_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_008990_21
TS23: epidermis Strong Regionally restricted euxassay_008990_21
TS23: vibrissa Strong Regionally restricted euxassay_008990_21
TS23: right lung Moderate Regionally restricted euxassay_008990_21

Specimen euxassay_008990_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_22
TS23: vibrissa Strong Regionally restricted euxassay_008990_22
TS23: epidermis Strong Regionally restricted euxassay_008990_22

Specimen euxassay_008990_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_23
TS23: epidermis Strong Regionally restricted euxassay_008990_23
TS23: vibrissa Strong Regionally restricted euxassay_008990_23
TS23: retina Moderate Regionally restricted euxassay_008990_23
TS23: cornea Moderate Regionally restricted euxassay_008990_23

Specimen euxassay_008990_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_008990_24
TS23: epidermis Strong Regionally restricted euxassay_008990_24
TS23: vibrissa Strong Regionally restricted euxassay_008990_24
TS23: cornea Moderate Regionally restricted euxassay_008990_24
TS23: retina Moderate Regionally restricted euxassay_008990_24


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory