About   Help   FAQ
Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Chd7Whi
whirligig
MGI:3588650
Summary 5 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
ht1
Chd7Whi/Chd7+ C3HeB/FeJ-Chd7Whi MGI:3589435
ht2
Chd7Whi/Chd7+ involves: C3HeB/FeJ MGI:3616771
cn3
Chd7Whi/Chd7+ B6.C3Fe-Chd7Whi MGI:4410366
cx4
Chd7Whi/Chd7+
Tbx1tm1Bld/Tbx1+
B6.Cg-Chd7Whi Tbx1tm1Bld MGI:4410367
cx5
Chd7Whi/Chd7+
Fgfr1Hspy/Fgfr1+
C3HeB/FeJ-Chd7Whi Fgfr1Hspy MGI:7491994


Genotype
MGI:3589435
ht1
Allelic
Composition
Chd7Whi/Chd7+
Genetic
Background
C3HeB/FeJ-Chd7Whi
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Chd7Whi mutation (1 available); any Chd7 mutation (136 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
behavior/neurological
• show a trend toward reduced response
• increase in the number of squares crossed in a modified SHIRPA
• increase in activity in both the periphery and center of an open field
• 47% increase in response latency

hearing/vestibular/ear
N
• positive Preyer reflex to clickbox indicates heterozygotes are not profoundly deaf
• malleus and incus appear normal
• the round window is smaller or entirely absent
• the shape of the stapes varies greatly and is only occassionally normal
• additional inner hair cells are found
• patches of an extra row of outer hair cells are frequent
• incomplete expressivity such that some inner ears lack semicircular canal whereas it is truncated in others
• majority of heterozygotes have truncated lateral semicircular canal rather than complete absence and ampulla is present
• thinning of the superior canal is occassionally seen but no truncation

growth/size/body
• decreased by 30%
• decreased by 16%
• both male and female adult mice exhibited a significantly lower body weight than wild-type controls (J:161880)
• decreased weight from early life to adulthood (J:330596)
• at 14 weeks of age

vision/eye
N
• no eye abnormalities are seen

homeostasis/metabolism
• show a trend toward reduced response
• increased blood urea levels
• decreased fasted insulin level
• decreased HDL and LDL levels
• glucose tolerance on average is similar to controls but has a binomial distribution with two groups (high and low responders) identified

immune system
• tends to be increased but not statistically significant

nervous system
• adult females showed a slightly reduced gonadotropin-releasing hormone (GnRH1) neuron density in the median eminence relative to wild-type controls
• additional inner hair cells are found
• patches of an extra row of outer hair cells are frequent
• severely enlarged third dorsal ventricle
• absence of midline crossing resulting in dysgenesis of the corpus callosum in one of 3 mice
• abnormally shaped
• 2 of 23 adult mice had abnormal olfactory bulbs; one olfactory bulb consisted of two parts while a second one showed asymmetrical hypoplasia
• however, the layered organization of the adult olfactory bulb was normal and no morphological abnormalities were noted in the olfactory epithelia or olfactory bulbs at E16.5
• adult mice exhibited a slightly decreased olfactory bulb/brain length ratio relative to wild-type controls
• 1 of 23 adult mice exhibited mild asymmetrical olfactory bulb hypoplasia
• adult females showed slightly reduced numbers of hypothalamic GnRH1 neurons
• however, no difference in GnRH1 neuron density is noted at E16.5

hematopoietic system
• tends to be increased but not statistically significant

reproductive system
• mean testis weight of adult males was significantly lower than in wild-type controls
• however, most males showed a significantly increased testis weight/body weight ratio (gonadosomatic index, GSI) due to a lower body weight
• 2 of 12 adult males exhibited severely hypoplastic testes with a reduced gonadosomatic index (GSI)
• all (9 of 9) adult females had abnormal uteri
• most uteri were shorter and wider than in wild-type controls
• however, the combined weights of the uteri and ovaries were relatively normal
• a cyst in one uterine horn and one unilateral hypoplastic uterine horn were identified
• wider than normal uterine horns were observed
• number of days required to produce the first litter was significantly greater in both male and female mice than in wild-type controls
• however, the % of heterozygous x wild-type matings that did not produce a litter after 2 months was not different from that of wild-type x wild-type matings

taste/olfaction
• although mice showed an increased response to BALB/c urine compared with water, the response was significantly lower than in wild-type controls, as determined by the mean number of sniff bouts and their cumulative duration
• number of mice that did not explore the urine (non-responders) was greater (5 of 21) than in wild-type controls (1 of 19)
• poorer performance in smell test may be secondary to olfactory dysfunction or to balance disturbances

adipose tissue
• decreased by 30%

endocrine/exocrine glands
• adult females showed a slightly reduced gonadotropin-releasing hormone (GnRH1) neuron density in the median eminence relative to wild-type controls
• mean testis weight of adult males was significantly lower than in wild-type controls
• however, most males showed a significantly increased testis weight/body weight ratio (gonadosomatic index, GSI) due to a lower body weight
• 2 of 12 adult males exhibited severely hypoplastic testes with a reduced gonadosomatic index (GSI)

craniofacial
• the round window is smaller or entirely absent
• the shape of the stapes varies greatly and is only occassionally normal

skeleton
• the round window is smaller or entirely absent
• the shape of the stapes varies greatly and is only occassionally normal

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
CHARGE syndrome DOID:0050834 OMIM:214800
J:330596




Genotype
MGI:3616771
ht2
Allelic
Composition
Chd7Whi/Chd7+
Genetic
Background
involves: C3HeB/FeJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Chd7Whi mutation (1 available); any Chd7 mutation (136 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• after mating to wild-type mice only 33% of pups at weaning are heterozygous

behavior/neurological
• 1 of 28 of mice was a non-circler but displayed severe headshaking
• seen in 27 of 28 of mice with the 1 non-circler displaying severe headshaking

craniofacial
• at E15.5, 35% of mice have palate defects ranging from partial closure to complete cleft
• at E16.5, in some mice the palate shelves touch but have not fused while in others the palate remains open
• at E15.5 most mice with cleft palate had fewer folds in the palate
• at E16.5 in 2 of 3 mice with cleft palate the choanae are less well developed and the nasal bucal membrane persists
• at E15.5, the pinna primordium is smaller than in wild-type

hearing/vestibular/ear
• at E15.5, the pinna primordium is smaller than in wild-type

cardiovascular system
• at E15.5, 3 of 5 mice had an interventricular septal defect and these mice also had edema
• at E15.5 and E16.5, a few mice have mild to severe hemorrhage

homeostasis/metabolism
• at E15.5 and E16.5, about 45% of mice display mild or severe edema

growth/size/body
• at E15.5, 35% of mice have palate defects ranging from partial closure to complete cleft
• at E16.5, in some mice the palate shelves touch but have not fused while in others the palate remains open
• at E15.5 most mice with cleft palate had fewer folds in the palate
• at E16.5 in 2 of 3 mice with cleft palate the choanae are less well developed and the nasal bucal membrane persists
• at E15.5, the pinna primordium is smaller than in wild-type
• seen after weaning

adipose tissue

limbs/digits/tail
• at E15.5, toes on the hind feet had not fully separated; however, by E16.5 separation is complete

reproductive system
• 94% of females have vulva abnormalities
• most females have clitoral hypoplasia; however, no genital anomalies are seen in males

respiratory system
• at E16.5 in 2 of 3 mice with cleft palate the choanae are less well developed and the nasal bucal membrane persists

vision/eye
• about 50% of mice have symptoms of keratoconjunctivitis sicca due to dry eyes with the right eye more commonly affected (13 of 28) compared to the left eye (3 of 28)

digestive/alimentary system
• at E15.5, 35% of mice have palate defects ranging from partial closure to complete cleft
• at E16.5, in some mice the palate shelves touch but have not fused while in others the palate remains open
• at E15.5 most mice with cleft palate had fewer folds in the palate

immune system
• about 50% of mice have symptoms of keratoconjunctivitis sicca due to dry eyes with the right eye more commonly affected (13 of 28) compared to the left eye (3 of 28)

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
CHARGE syndrome DOID:0050834 OMIM:214800
J:104123




Genotype
MGI:4410366
cn3
Allelic
Composition
Chd7Whi/Chd7+
Genetic
Background
B6.C3Fe-Chd7Whi
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Chd7Whi mutation (1 available); any Chd7 mutation (136 available)
phenotype observed in females
phenotype observed in males
N normal phenotype

Malformations of the semicircular canals in Chd7Whi/Chd7+, Tbx1tm1Bld/Tbx1+, and Chd7Whi/Chd7+ Tbx1tm1Bld/Tbx1+ mice

hearing/vestibular/ear
• 20% of mice exhibit lateral canal truncations unlike wild-type mice
• 67% of mice possess an ampulla only unlike wild-type mice
• 93% mice exhibit posterior canal truncations unlike wild-type mice
• 7% of mice exhibit posterior canal fused to the crus commune unlike wild-type mice




Genotype
MGI:4410367
cx4
Allelic
Composition
Chd7Whi/Chd7+
Tbx1tm1Bld/Tbx1+
Genetic
Background
B6.Cg-Chd7Whi Tbx1tm1Bld
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Chd7Whi mutation (1 available); any Chd7 mutation (136 available)
Tbx1tm1Bld mutation (1 available); any Tbx1 mutation (34 available)
phenotype observed in females
phenotype observed in males
N normal phenotype

Malformations of the semicircular canals in Chd7Whi/Chd7+, Tbx1tm1Bld/Tbx1+, and Chd7Whi/Chd7+ Tbx1tm1Bld/Tbx1+ mice

hearing/vestibular/ear
• all mice exhibit defects in the lateral canal including canal truncation (16%), presence of only the ampulla (67%), or absence of the canal (17%) unlike wild-type mice
• 58% mice exhibit posterior canal truncations unlike wild-type mice
• 42% of mice exhibit posterior canal fused to the crus commune unlike wild-type mice




Genotype
MGI:7491994
cx5
Allelic
Composition
Chd7Whi/Chd7+
Fgfr1Hspy/Fgfr1+
Genetic
Background
C3HeB/FeJ-Chd7Whi Fgfr1Hspy
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Chd7Whi mutation (1 available); any Chd7 mutation (136 available)
Fgfr1Hspy mutation (1 available); any Fgfr1 mutation (221 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• 2 mice were recovered at P0 (1 dead), suggesting perinatal or early postnatal lethality
• no mice were recovered at weaning (0/55)

growth/size/body
• at E16.5, mice showed cleft palate with variable penetrance
• at E16.5, mice showed choanal atresia with variable penetrance

craniofacial
• at E16.5, mice showed cleft palate with variable penetrance
• at E16.5, mice showed choanal atresia with variable penetrance

cardiovascular system
• at E16.5, mice showed a heart defect with variable penetrance

digestive/alimentary system
• at E16.5, mice showed cleft palate with variable penetrance

respiratory system
• at E16.5, mice showed choanal atresia with variable penetrance

nervous system
N
• mice showed a normal distribution of the GnRH1 neurons at E16.5
• mice do NOT display olfactory bulb defects

reproductive system
N
• mice do NOT display hypogonadotropic hypogonadism





Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
04/16/2024
MGI 6.23
The Jackson Laboratory