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Snord53 Gene Detail
Summary
  • Symbol
    Snord53
  • Name
    small nucleolar RNA, C/D box 53
  • Synonyms
    MBII-35, U53
Location &
Maps
more
  • Sequence Map
    Chr17:71947884-71947951 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 41.87 cM
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819542
 snoRNA gene Chr17:71947874-71947951 (+)
129S1/SvImJ MGP_129S1SvImJ_G0038904
 snoRNA gene Chr17:74106678-74106755 (+)
A/J MGP_AJ_G0038899
 snoRNA gene Chr17:71860598-71860675 (+)
AKR/J MGP_AKRJ_G0038834
 snoRNA gene Chr17:72827958-72828035 (+)
BALB/cJ MGP_BALBcJ_G0038882
 snoRNA gene Chr17:71794283-71794360 (+)
C3H/HeJ MGP_C3HHeJ_G0038546
 snoRNA gene Chr17:73789215-73789292 (+)
C57BL/6NJ MGP_C57BL6NJ_G0039431
 snoRNA gene Chr17:76814843-76814920 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036165
 snoRNA gene Chr17:67606422-67606499 (+)
CAST/EiJ MGP_CASTEiJ_G0037687
 snoRNA gene Chr17:74232563-74232640 (+)
CBA/J MGP_CBAJ_G0038518
 snoRNA gene Chr17:80012463-80012540 (+)
DBA/2J MGP_DBA2J_G0038706
 snoRNA gene Chr17:70518786-70518863 (+)
FVB/NJ MGP_FVBNJ_G0038658
 snoRNA gene Chr17:69991557-69991634 (+)
LP/J MGP_LPJ_G0038746
 snoRNA gene Chr17:74842332-74842409 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0038659
 snoRNA gene Chr17:79867103-79867180 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0039533
 snoRNA gene Chr17:73361243-73361320 (+)
PWK/PhJ MGP_PWKPhJ_G0037372
 snoRNA gene Chr17:69828721-69828798 (+)
SPRET/EiJ MGP_SPRETEiJ_G0037128
 snoRNA gene Chr17:70066503-70066580 (+)
WSB/EiJ MGP_WSBEiJ_G0037915
 snoRNA gene Chr17:74193272-74193349 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217456 NCBI Gene Model | MGI Sequence Detail 68 C57BL/6J ±  kb
transcript NR_028551 RefSeq | MGI Sequence Detail 68 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 7
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory