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Scarna10 Gene Detail
Summary
  • Symbol
    Scarna10
  • Name
    small Cajal body-specific RNA 10
  • Synonyms
    MBI-52, U85
Location &
Maps
more
  • Sequence Map
    Chr6:125163324-125163394 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 59.32 cM
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819482
 snoRNA gene Chr6:125163322-125163646 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039356
 snoRNA gene Chr6:128519053-128519377 (-)
A/J MGP_AJ_G0039353
 snoRNA gene Chr6:123671407-123671731 (-)
AKR/J MGP_AKRJ_G0039279
 snoRNA gene Chr6:127048405-127048729 (-)
BALB/cJ MGP_BALBcJ_G0039333
 snoRNA gene Chr6:123269919-123270243 (-)
C3H/HeJ MGP_C3HHeJ_G0038994
 snoRNA gene Chr6:127120294-127120618 (-)
C57BL/6NJ MGP_C57BL6NJ_G0039882
 snoRNA gene Chr6:131902468-131902792 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0038126
 snoRNA gene Chr6:127321727-127322051 (-)
CBA/J MGP_CBAJ_G0038963
 snoRNA gene Chr6:136961589-136961913 (-)
DBA/2J MGP_DBA2J_G0039151
 snoRNA gene Chr6:122603502-122603826 (-)
FVB/NJ MGP_FVBNJ_G0039107
 snoRNA gene Chr6:121516269-121516593 (-)
LP/J MGP_LPJ_G0039196
 snoRNA gene Chr6:128684422-128684746 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0039111
 snoRNA gene Chr6:140993211-140993535 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0039981
 snoRNA gene Chr6:126949896-126950220 (-)
PWK/PhJ MGP_PWKPhJ_G0037803
 snoRNA gene Chr6:120845965-120846289 (-)
SPRET/EiJ MGP_SPRETEiJ_G0037557
 snoRNA gene Chr6:125025753-125026077 (-)
WSB/EiJ MGP_WSBEiJ_G0038353
 snoRNA gene Chr6:127320504-127320828 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217413 NCBI Gene Model | MGI Sequence Detail 71 C57BL/6J ±  kb
transcript NR_028517 RefSeq | MGI Sequence Detail 71 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 6
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory