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Trav7-4 Gene Detail
Summary
  • Symbol
    Trav7-4
  • Name
    T cell receptor alpha variable 7-4
  • Feature Type
    gene segment
  • IDs
    MGI:3649611
    NCBI Gene: 386450
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53698666-53699195 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.38 cM
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649611
 gene segment Chr14:53698556-53699195 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002210
 gene segment Chr14:31361872-31362500 (+)
CAST/EiJ MGP_CASTEiJ_G0002434
 gene segment Chr14:44070113-44070752 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002477
 gene segment Chr14:44829492-45251802 (+)
LP/J MGP_LPJ_G0002538
 gene segment Chr14:47832879-47833518 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002466
 gene segment Chr14:50209001-50210071 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002618
 gene segment Chr14:46592559-46593198 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002353
 gene segment Chr14:43063838-43064477 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Vertebrate Orthologs
    9
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Synonyms
    TCRAV12S1, TCRAV2S3, TRAV121
  • Links
    NCBI Gene ID: 28674
    UniProt: A0A0B4J245

  • Chr Location
    14q11.2; chr14:21841240-21841774 (+)  GRCh38
  • Human Ortholog
    TRAV12-2, T cell receptor alpha variable 12-2
  • Synonyms
    TCRAV12S2, TCRAV2S1, TRAV122
  • Links
    NCBI Gene ID: 28673
    UniProt: A0A075B6T6

  • Chr Location
    14q11.2; chr14:21887857-21888502 (+)  GRCh38
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    17
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 386450 NCBI Gene Model | MGI Sequence Detail 530 C57BL/6J ±  kb
transcript X56721 GenBank | ENA | DDBJ | MGI Sequence Detail 435 C57BL/6  
polypeptide A0A075B6C1 UniProt | EBI | MGI Sequence Detail 113 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 14
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:8041 Becker DM, et al., Variability and repertoire size of T-cell receptor V alpha gene segments. Nature. 1985 Oct 3-9;317(6036):430-4
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory