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Pabpc4l Gene Detail
Summary
  • Symbol
    Pabpc4l
  • Name
    poly(A) binding protein, cytoplasmic 4-like
  • Synonyms
    C330050A14Rik, EG241989
  • Feature Type
    protein coding gene
  • IDs
    MGI:3643087
    NCBI Gene: 241989
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:46396632-46402654 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 20.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643087
 protein coding gene Chr3:46395291-46402654 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027190
 protein coding gene Chr3:44668020-44674041 (-)
A/J MGP_AJ_G0027150
 protein coding gene Chr3:43467109-43473557 (-)
AKR/J MGP_AKRJ_G0027119
 protein coding gene Chr3:44321566-44327592 (-)
BALB/cJ MGP_BALBcJ_G0027162
 protein coding gene Chr3:43319140-43325298 (-)
C3H/HeJ MGP_C3HHeJ_G0026905
 protein coding gene Chr3:44477036-44483058 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027608
 protein coding gene Chr3:46507702-46513723 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024968
 protein coding gene Chr3:40505519-40511523 (-)
CAST/EiJ MGP_CASTEiJ_G0026358
 protein coding gene Chr3:44429005-44434917 (-)
CBA/J MGP_CBAJ_G0026882
 protein coding gene Chr3:47872082-47878094 (-)
DBA/2J MGP_DBA2J_G0027016
 protein coding gene Chr3:43076805-43082797 (-)
FVB/NJ MGP_FVBNJ_G0026984
 protein coding gene Chr3:42205908-42211931 (-)
LP/J MGP_LPJ_G0027128
 protein coding gene Chr3:45407033-45413044 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027002
 protein coding gene Chr3:51380504-51388391 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027667
 protein coding gene Chr3:44225779-44231802 (-)
PWK/PhJ MGP_PWKPhJ_G0026090
 protein coding gene Chr3:42611651-42617702 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025903
 protein coding gene Chr3:43829381-43836312 (-)
WSB/EiJ MGP_WSBEiJ_G0026432
 protein coding gene Chr3:44269312-44275315 (-)



Homology
more
  • Human Ortholog
    PABPC4L, poly(A) binding protein cytoplasmic 4 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PABPC4L, poly(A) binding protein cytoplasmic 4 like
  • Links
    NCBI Gene ID: 132430
    UniProt: P0CB38

  • Chr Location
    4q28.3; chr4:133948459-134201901 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090919 Ensembl Gene Model | MGI Sequence Detail 6023 C57BL/6J ±  kb
transcript ENSMUST00000192793 Ensembl | MGI Sequence Detail 5252 Not Applicable  
polypeptide ENSMUSP00000141300 Ensembl | MGI Sequence Detail 370 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR034364 PABP, RNA recognition motif 1
    IPR045305 PABP, RNA recognition motif 2
    IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
    IPR003954 RNA recognition motif domain, eukaryote
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
Other
Accession IDs
less
MGI:1925954
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory