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Ctxn3 Gene Detail
Summary
  • Symbol
    Ctxn3
  • Name
    cortexin 3
  • Synonyms
    ENSMUSG00000069372
  • Feature Type
    protein coding gene
  • IDs
    MGI:3642816
    NCBI Gene: 629147
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:57601588-57611205 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 32.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642816
 protein coding gene Chr18:57600824-57611206 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024449
 protein coding gene Chr18:56903579-56913107 (+)
A/J MGP_AJ_G0024415
 protein coding gene Chr18:54650166-54660794 (+)
AKR/J MGP_AKRJ_G0024385
 protein coding gene Chr18:56159931-56169546 (+)
BALB/cJ MGP_BALBcJ_G0024415
 protein coding gene Chr18:54821235-54830852 (+)
C3H/HeJ MGP_C3HHeJ_G0024182
 protein coding gene Chr18:56353204-56362998 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024861
 protein coding gene Chr18:58711130-58720514 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022293
 protein coding gene Chr18:54247936-54257518 (+)
CAST/EiJ MGP_CASTEiJ_G0023656
 protein coding gene Chr18:56390479-56401534 (+)
CBA/J MGP_CBAJ_G0024152
 protein coding gene Chr18:60575222-60584844 (+)
DBA/2J MGP_DBA2J_G0024282
 protein coding gene Chr18:54342596-54352070 (+)
FVB/NJ MGP_FVBNJ_G0024249
 protein coding gene Chr18:53733933-53743438 (+)
LP/J MGP_LPJ_G0024367
 protein coding gene Chr18:56864467-56874072 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024279
 protein coding gene Chr18:62175570-62186506 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024908
 protein coding gene Chr18:56269807-56279362 (+)
PWK/PhJ MGP_PWKPhJ_G0023400
 protein coding gene Chr18:54371945-54381882 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023206
 protein coding gene Chr18:56350789-56362097 (+)
WSB/EiJ MGP_WSBEiJ_G0023719
 protein coding gene Chr18:56187525-56199045 (+)



Homology
more
  • Human Ortholog
    CTXN3, cortexin 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTXN3, cortexin 3
  • Synonyms
    KABE
  • Links
    NCBI Gene ID: 613212
    neXtProt AC: NX_Q4LDR2
    UniProt: Q4LDR2

  • Chr Location
    chr5:127649082-127658630 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    5
  • Endonuclease-mediated
    3
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    2 involving Ctxn3
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    751
  • Tissues
    43
  • cDNA Data
    12
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000069372 Ensembl Gene Model | MGI Sequence Detail 9618 C57BL/6J ±  kb
transcript ENSMUST00000091892 Ensembl | MGI Sequence Detail 1441 Not Applicable  
polypeptide ENSMUSP00000089507 Ensembl | MGI Sequence Detail 80 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 2
References
more
  • Summaries
    All 29
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:208 Hertwig P, Neue Mutationen und Koppelungsgruppen bei der Hausmaus. Z Indukt Abstamm Vererbungsl. 1942;80(1):220-246
  • Latest
    J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory