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Slc9c1 Gene Detail
Summary
  • Symbol
    Slc9c1
  • Name
    solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
  • Synonyms
    LOC208169, Slc9a10, spermNHE
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685456
    NCBI Gene: 208169
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:45355672-45427364 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 29.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    770 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685456
 protein coding gene Chr16:45355629-45427364 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022853
 protein coding gene Chr16:44317986-44388093 (+)
A/J MGP_AJ_G0022818
 protein coding gene Chr16:42339943-42405711 (+)
AKR/J MGP_AKRJ_G0022790
 protein coding gene Chr16:43729700-43797637 (+)
BALB/cJ MGP_BALBcJ_G0022819
 protein coding gene Chr16:42360950-42426997 (+)
C3H/HeJ MGP_C3HHeJ_G0022583
 protein coding gene Chr16:43889598-43962083 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023266
 protein coding gene Chr16:45328104-45409330 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020780
 protein coding gene Chr16:42701073-42761171 (+)
CAST/EiJ MGP_CASTEiJ_G0022108
 protein coding gene Chr16:44075484-44152156 (+)
CBA/J MGP_CBAJ_G0022554
 protein coding gene Chr16:47232649-47316538 (+)
DBA/2J MGP_DBA2J_G0022686
 protein coding gene Chr16:42077771-42143860 (+)
FVB/NJ MGP_FVBNJ_G0022662
 protein coding gene Chr16:41990687-42055970 (+)
LP/J MGP_LPJ_G0022754
 protein coding gene Chr16:44056327-44125424 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022680
 protein coding gene Chr16:46661479-46733120 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023281
 protein coding gene Chr16:43742807-43811142 (+)
PWK/PhJ MGP_PWKPhJ_G0021848
 protein coding gene Chr16:42445044-42511355 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021679
 protein coding gene Chr16:43670571-43749053 (+)
WSB/EiJ MGP_WSBEiJ_G0022153
 protein coding gene Chr16:43835544-43907696 (+)



Homology
more
  • Human Ortholog
    SLC9C1, solute carrier family 9 member C1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC9C1, solute carrier family 9 member C1
  • Synonyms
    NHE, NHE-10, SLC9A10, sperm-NHE
  • Links
    NCBI Gene ID: 285335
    neXtProt AC: NX_Q4G0N8
    UniProt: Q4G0N8

  • Chr Location
    3q13.2; chr3:112140898-112294227 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice display male infertility and asthenozoospermia.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000033210 Ensembl Gene Model | MGI Sequence Detail 71693 C57BL/6J ±  kb
    transcript ENSMUST00000159945 Ensembl | MGI Sequence Detail 3836 Not Applicable  
    polypeptide ENSMUSP00000124969 Ensembl | MGI Sequence Detail 1175 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3

      Microarray probesets 1
    References
    more
    • Summaries
      All 25
      Gene Ontology 5
      Phenotypes 7
    • Earliest
      J:85118 Oduru S, et al., Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs. BMC Genomics. 2003 Jun 3;4(1):22
    • Latest
      J:328456 Hernandez-Garduno S, et al., Hyperpolarization induces cytosolic alkalization of mouse sperm flagellum probably through sperm Na+/H+ exchanger. Reproduction. 2022 Oct 1;164(4):125-134
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory